Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq79 96.9 3e-15 seq898 87.8 1e-12 >seq79 Length=1654135 Score = 96.9 bits (106), Expect = 3e-15 Identities = 101/130 (78%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || || || || |||||||| |||||||| || || || || | |||||||| | Sbjct 1256907 CATGAAGAGGTCCGGGATCCAGAGCGCGTAGAAAAGGTCCCGAGCCCTCTGCTCCTCCTT 1256848 Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 || ||| || || || |||||||||||||||||||||| ||||| || |||| || Sbjct 1256847 CCCCGTG-TTCTTCTTCAGGTCGAGGAACTCAAAGATGTCGAAGTGCCAGGGCTCCAAGT 1256789 Query 66459 AGATGGCGAA 66468 |||||||||| Sbjct 1256788 AGATGGCGAA 1256779 >seq898 Length=501174 Score = 87.8 bits (96), Expect = 1e-12 Identities = 89/115 (77%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 61262 GTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321 |||| || || || || ||| | | || || || |||||||| |||||||||||||||| Sbjct 435888 GTTTAGC-CAAGAAGTACAAATCACAGAAGCCCGCTGTTTCTATGGCTTCCAGATTGCCA 435946 Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 ||||||| | || || || ||||| ||| | ||||| ||||| ||||| | ||| Sbjct 435947 TGGAGAACATTCATTCAGAAATGTATAGTTTACTCATTGATACTTACATTAAGGA 436001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397529576295200