Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq13926 156 7e-36 seq28706 131 3e-28 seq12948 102 1e-19 seq21451 95.1 2e-17 >seq13926 Length=162250 Score = 156 bits (172), Expect = 7e-36 Identities = 106/118 (90%), Gaps = 1/118 (1%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | ||||| |||||||||||||||||||||||||||| |||||||| Sbjct 43048 CTAGTTAGCATGCCAGAGTCTCATTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 43107 Query 202 A-CTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 | |||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||| Sbjct 43108 AACTAAGAACAGCCATGCACCACCACCCATAGAATCGAGAAAGAGCTATCGATCTGTC 43165 >seq28706 Length=46787 Score = 131 bits (144), Expect = 3e-28 Identities = 88/98 (90%), Gaps = 4/98 (4%) Strand=Plus/Minus Query 161 CTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCAC 220 |||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||| Sbjct 8259 CTCGTTCGTTATTGGAATTA----GACAAATCGCTCCACCAACTAAGAACGGCCATGCAC 8204 Query 221 CACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||| ||||| ||||||||||||||||||| ||||||| Sbjct 8203 CACTACCCACAGAATCAAGAAAGAGCTATTGATCTGTC 8166 >seq12948 Length=162277 Score = 102 bits (112), Expect = 1e-19 Identities = 82/98 (84%), Gaps = 1/98 (1%) Strand=Plus/Plus Query 161 CTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCAC 220 || ||| ||| | ||||||||| ||| || | | |||||||||||||||| |||||||| Sbjct 115863 CTTGTTGGTTGTTGGAATTAACTAGAAAAGTTATTCCACCAACTAAGAACAACCATGCAC 115922 Query 221 CACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||| |||| |||||| |||||||||||| ||||||| Sbjct 115923 CACC-CCCACAGAATCGAGAAAGAGCTATTGATCTGTC 115959 >seq21451 Length=134315 Score = 95.1 bits (104), Expect = 2e-17 Identities = 60/65 (92%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 |||||||||||||| |||||||||||||||||| || |||||| ||||||||||||| || Sbjct 16426 CTCCACCAACTAAGCACGGCCATGCACCACCACTCACAGAATCGAGAAAGAGCTATCGAT 16485 Query 254 CTGTC 258 ||||| Sbjct 16486 CTGTC 16490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796577052123