Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq26415 226 9e-57 seq25875 206 9e-51 seq24241 93.3 1e-16 seq23278 82.4 2e-13 >seq26415 Length=60480 Score = 226 bits (250), Expect = 9e-57 Identities = 166/191 (87%), Gaps = 3/191 (2%) Strand=Plus/Minus Query 188 TAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-CCGAAACGG--CTCCCACT 244 ||||| |||||||||| || ||||||||||||||| ||| || | ||| |||||||| Sbjct 36045 TAAGTGAAAAAACGATCAGAGTAGTGGTATTTCACCGGCGGCCCAGGCGGGCCTCCCACT 35986 Query 245 TATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCT 304 ||||| ||||||||| || |||||| | | |||||||||||||||||||||||||| Sbjct 35985 TATTCCACACCTCTCGTATCTCTTCACAGGGCCAGACTAGAGTCAAGCTCAACAGGGTCT 35926 Query 305 TCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGA 364 ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| Sbjct 35925 TCTTTCCCCGCTGATTCCGCCAAGCCCTTTCTCTTGGCTGTGGTTTCGCTAGATAGTAGG 35866 Query 365 TAGGGACAGTG 375 |||| |||||| Sbjct 35865 TAGGTACAGTG 35855 >seq25875 Length=66575 Score = 206 bits (228), Expect = 9e-51 Identities = 200/250 (80%), Gaps = 8/250 (3%) Strand=Plus/Plus Query 180 TCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGC-- 237 |||||| | |||| | |||| ||| || ||||||||||||||| | || | ||| Sbjct 17626 TCATTGGT-AAGTGACAAAATGATCAGAGTAGTGGTATTTCACCAGTACC--AGTGGCCC 17682 Query 238 TCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAAC 297 |||||||||||| | ||||||| || ||| || | | || |||||||||||||||| Sbjct 17683 TCCCACTTATTCCATGCCTCTCATGTTTCTTCCCAGGGCCAGA-TAGAGTCAAGCTCAAC 17741 Query 298 AGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGA 357 || ||||||||||||| |||| || |||||| | ||||||||| | ||||||| |||| Sbjct 17742 AGTGTCTTCTTTCCCCAATGATCCCACCAAGCTC-TTCCCTTGG-TATGGTTTCATTAGA 17799 Query 358 TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGA 417 ||||||||| ||||||||| ||||| ||| ||||| |||| || ||||||||||||||| Sbjct 17800 TAGTAGATAAGGACAGTGGAAATCTTGTTCATCCAGTCATATGCATCACTAATTAGATGA 17859 Query 418 CGAGGCATTT 427 ||||||||| Sbjct 17860 TGAGGCATTT 17869 >seq24241 Length=287774 Score = 93.3 bits (102), Expect = 1e-16 Identities = 75/91 (82%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 441 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTC 500 || |||||||||||||| || |||||| | || |||||||||||||||| ||||||| Sbjct 59768 GACTCATAGTTACTCCCTCCATTTACCTATGTTTCATTGAATTTCTTCACTTGGACATTC 59827 Query 501 AGAGCACTGGGCAGAAATCACATTGCGTCAA 531 || ||||||||| ||||||||| | |||| Sbjct 59828 AGTTCACTGGGCAAAAATCACATCACATCAA 59858 >seq23278 Length=94995 Score = 82.4 bits (90), Expect = 2e-13 Identities = 49/50 (98%), Gaps = 1/50 (2%) Strand=Plus/Plus Query 384 GTTA-ATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 |||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 41622 GTTATATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 41671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634727705184