Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10]
28,883 sequences; 1,532,390,814 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq2658 210 7e-52
seq17815 132 1e-28
seq19225 111 5e-22
seq3442 80.6 8e-13
>seq2658
Length=31449
Score = 210 bits (232), Expect = 7e-52
Identities = 228/295 (77%), Gaps = 12/295 (4%)
Strand=Plus/Plus
Query 94 CTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAAT 153
||| || | |||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 27012 CTGGCTGCTTTGGATGTGGTAGCCGTTTCTCAGGCTCCCACTCCGGAATCGAACCCTGAT 27071
Query 154 TCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGC 213
|||||||||||||| | |||||||||||| | ||||||||||||||||||||||
Sbjct 27072 TCCCCGTTACCCGTGGTCACCATGGTAGGCGCAGAAAGTACCATCGAAAGTTGATAGGGC 27131
Query 214 AGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGAT--TCGTTAAGTTATTATGA 271
||| ||| ||||| | |||||| | | || |||||||| | | ||||| ||
Sbjct 27132 AGACATTCGAATGCGTCGTCGCCGCCACGCGGGCATGCGATCAGCCCGAGGTTATCTAGA 27191
Query 272 ATCACC-AAGGAGCC-CCGAAGGGC----GTTGGTTTTTTATCTAATAAATACACCCCTT 325
||||| ||| |||| | | || ||||| |||| ||| |||||| ||| | |
Sbjct 27192 GTCACCAAAGCAGCCTGGGGCGAGCCCAGGTTGG-TTTTGGTCTGATAAATGCACGCATC 27250
Query 326 CC--GAAGTC-GGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCC 377
|| || ||| | | | | ||||||||||||||||||||||||||| |||||||
Sbjct 27251 CCCGGAGGTCAGCGCTCGTCAGCATGTATTAGCTCTAGAATTACCACAGTTATCC 27305
>seq17815
Length=155111
Score = 132 bits (146), Expect = 1e-28
Identities = 95/108 (88%), Gaps = 1/108 (1%)
Strand=Plus/Plus
Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61
|||||||||||||||| | || | |||||| ||||||| ||||| |||||||||||||
Sbjct 128838 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTTGTCACTACCTC 128897
Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATG 109
|| | ||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 128898 CCTGCGTCGGGAGTGGGTAATTTGCACGCCTGCTGCCTTCCTTGGATG 128945
>seq19225
Length=379413
Score = 111 bits (122), Expect = 5e-22
Identities = 109/137 (80%), Gaps = 8/137 (6%)
Strand=Plus/Plus
Query 346 ATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGA 405
||||||||||||| |||||||||| |||||| || ||||| | | || ||| |
Sbjct 203546 ATGTATTAGCTCTGGAATTACCACAGTTATC--TG-AGTAACGG----TGGAAGCAACCA 203598
Query 406 TAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGC 465
||| |||||||||||||||||| |||||||||||| || || | ||||||| || ||
Sbjct 203599 TAAGTGATTTAATGAGCCATTCCCAGTTTCACTGT-CAGCCTGTGTGTACTTAGGCACGC 203657
Query 466 ATGGCTTAATCTTTGAG 482
|||||||||||||| ||
Sbjct 203658 ATGGCTTAATCTTTCAG 203674
>seq3442
Length=31585
Score = 80.6 bits (88), Expect = 8e-13
Identities = 49/51 (96%), Gaps = 1/51 (2%)
Strand=Plus/Minus
Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503
||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 30922 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATA-CACTACTGGCA 30873
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1509963751168
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |