Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq2658 210 7e-52 seq17815 132 1e-28 seq19225 111 5e-22 seq3442 80.6 8e-13 >seq2658 Length=31449 Score = 210 bits (232), Expect = 7e-52 Identities = 228/295 (77%), Gaps = 12/295 (4%) Strand=Plus/Plus Query 94 CTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAAT 153 ||| || | |||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 27012 CTGGCTGCTTTGGATGTGGTAGCCGTTTCTCAGGCTCCCACTCCGGAATCGAACCCTGAT 27071 Query 154 TCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGC 213 |||||||||||||| | |||||||||||| | |||||||||||||||||||||| Sbjct 27072 TCCCCGTTACCCGTGGTCACCATGGTAGGCGCAGAAAGTACCATCGAAAGTTGATAGGGC 27131 Query 214 AGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGAT--TCGTTAAGTTATTATGA 271 ||| ||| ||||| | |||||| | | || |||||||| | | ||||| || Sbjct 27132 AGACATTCGAATGCGTCGTCGCCGCCACGCGGGCATGCGATCAGCCCGAGGTTATCTAGA 27191 Query 272 ATCACC-AAGGAGCC-CCGAAGGGC----GTTGGTTTTTTATCTAATAAATACACCCCTT 325 ||||| ||| |||| | | || ||||| |||| ||| |||||| ||| | | Sbjct 27192 GTCACCAAAGCAGCCTGGGGCGAGCCCAGGTTGG-TTTTGGTCTGATAAATGCACGCATC 27250 Query 326 CC--GAAGTC-GGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCC 377 || || ||| | | | | ||||||||||||||||||||||||||| ||||||| Sbjct 27251 CCCGGAGGTCAGCGCTCGTCAGCATGTATTAGCTCTAGAATTACCACAGTTATCC 27305 >seq17815 Length=155111 Score = 132 bits (146), Expect = 1e-28 Identities = 95/108 (88%), Gaps = 1/108 (1%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || | |||||| ||||||| ||||| ||||||||||||| Sbjct 128838 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTTGTCACTACCTC 128897 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATG 109 || | ||||||| |||||||||||| |||||||||||||||||||||| Sbjct 128898 CCTGCGTCGGGAGTGGGTAATTTGCACGCCTGCTGCCTTCCTTGGATG 128945 >seq19225 Length=379413 Score = 111 bits (122), Expect = 5e-22 Identities = 109/137 (80%), Gaps = 8/137 (6%) Strand=Plus/Plus Query 346 ATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGA 405 ||||||||||||| |||||||||| |||||| || ||||| | | || ||| | Sbjct 203546 ATGTATTAGCTCTGGAATTACCACAGTTATC--TG-AGTAACGG----TGGAAGCAACCA 203598 Query 406 TAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGC 465 ||| |||||||||||||||||| |||||||||||| || || | ||||||| || || Sbjct 203599 TAAGTGATTTAATGAGCCATTCCCAGTTTCACTGT-CAGCCTGTGTGTACTTAGGCACGC 203657 Query 466 ATGGCTTAATCTTTGAG 482 |||||||||||||| || Sbjct 203658 ATGGCTTAATCTTTCAG 203674 >seq3442 Length=31585 Score = 80.6 bits (88), Expect = 8e-13 Identities = 49/51 (96%), Gaps = 1/51 (2%) Strand=Plus/Minus Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 ||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 30922 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATA-CACTACTGGCA 30873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509963751168