Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq25428 102 6e-17 seq10558 87.8 1e-12 >seq25428 Length=70394 Score = 102 bits (112), Expect = 6e-17 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || || || || |||||||| ||||||||||| || || || | |||||||| | Sbjct 15453 CATGAAGAGGTCCGGGATCCAGAGCGCGTAGAAGAGGTCCCGGGCCCTCTGCTCCTCCTT 15512 Query 66400 GCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTA 66459 ||| || || || |||||| ||||||||||||||| ||||| || |||||||| Sbjct 15513 CCCGGTGTTCTTCTTCAGGTCGAGAAACTCAAAGATGTCGAAGTGCCAGGGCTCCAGGTA 15572 Query 66460 GATGGCGAA 66468 ||||||||| Sbjct 15573 GATGGCGAA 15581 >seq10558 Length=413728 Score = 87.8 bits (96), Expect = 1e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| || || || ||||| | || || || |||||||| |||||||||| Sbjct 112597 TGGAGCGATTCAGCCAAGAAGTACAAGTCACAGAAGCACGCTGTTTCTATGGCTTCCAGA 112656 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 ||||||||||||| | || || || ||||| ||| | || || ||||| ||||| | || Sbjct 112657 TTGCCATGGAGAACATTCATTCAGAAATGTATAGTTTACTTATTGATACTTACATTAAGG 112716 Query 61376 A 61376 | Sbjct 112717 A 112717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397428051467120