Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq20071 168 1e-39 seq16896 168 1e-39 seq17849 165 1e-38 seq18916 102 1e-19 >seq20071 Length=1020 Score = 168 bits (186), Expect = 1e-39 Identities = 181/234 (77%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||||||||| ||||| | | |||||| |||||| | Sbjct 620 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCACACTTACTGGGAATT-C 677 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | || ||||||||| | |||||||||||| |||| | || Sbjct 678 CTCGTTCGTGGGGAATAATTGCAATCCCCAGTCCCCATCACGAATGGGGTTCATCGGGTT 737 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| ||||| |||| ||| | || || |||| |||||||||||||||||| Sbjct 738 ACCCGCACCTGCCGGCGTAGGGTAGGCACACGCTGAACCATTCAGTGTAGCGCGCGTGCA 797 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 798 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGGC 850 >seq16896 Length=1100 Score = 168 bits (186), Expect = 1e-39 Identities = 181/234 (77%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||||||||| ||||| | | |||||| |||||| | Sbjct 369 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCACACTTACTGGGAATT-C 426 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | || ||||||||| | |||||||||||| |||| | || Sbjct 427 CTCGTTCGTGGGGAATAATTGCAATCCCCAGTCCCCATCACGAATGGGGTTCATCGGGTT 486 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| ||||| |||| ||| | || || |||| |||||||||||||||||| Sbjct 487 ACCCGCACCTGCCGGCGTAGGGTAGGCACACGCTGAACCATTCAGTGTAGCGCGCGTGCA 546 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 547 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGGC 599 >seq17849 Length=1072 Score = 165 bits (182), Expect = 1e-38 Identities = 181/234 (77%), Gaps = 5/234 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||||||||| ||||| | | |||||| |||||| | Sbjct 452 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCACACTTACTGGGAATT-C 509 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | || ||||||||| | |||||||||||| |||| | || Sbjct 510 CTCGTTCGTGGG-AATAATTGCAATCCCCAGTCCCCATCACGAATGGGGTTCATCGGGTT 568 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| ||||| |||| ||| | || || |||| |||||||||||||||||| Sbjct 569 ACCCGCACCTGCCGGCGTAGGGTAGGCACACGCTGAACCATTCAGTGTAGCGCGCGTGCA 628 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 629 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGGC 681 >seq18916 Length=1046 Score = 102 bits (112), Expect = 1e-19 Identities = 93/116 (80%), Gaps = 1/116 (1%) Strand=Plus/Minus Query 118 TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTG 177 ||||||| ||||| |||| ||| | || || |||| ||||||||||||||||| Sbjct 1045 TTACCCGCACCTGCCGGCGTAGGGTAGGCACACGCTGAACCATTCAGTGTAGCGCGCGTG 986 Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 | |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 985 CAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGGC 931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751845528860