Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq19732 95.1 7e-18 seq17872 95.1 7e-18 seq15409 95.1 7e-18 seq14776 95.1 7e-18 seq11581 95.1 7e-18 seq18916 91.5 8e-17 seq13875 91.5 8e-17 seq4683 89.7 3e-16 seq16896 86.0 3e-15 >seq19732 Length=1028 Score = 95.1 bits (104), Expect = 7e-18 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || || ||| ||| |||| ||||| |||| Sbjct 775 GAACCCAAAGACTTTGGTTTCCCGGTAGCTGCTCGGCGGGTCATGGGAATAACGCCGCCG 716 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| | ||||||||| ||||| || ||||||||||||||||||||||||||| Sbjct 715 GATCGCCAGTCGGCATCGTTTATAGTCGGAACTACGACGGTATCTGATCGTCTTCGA 659 >seq17872 Length=1071 Score = 95.1 bits (104), Expect = 7e-18 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || || ||| ||| |||| ||||| |||| Sbjct 259 GAACCCAAAGACTTTGGTTTCCCGGTAGCTGCTCGGCGGGTCATGGGAATAACGCCGCCG 318 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| | ||||||||| ||||| || ||||||||||||||||||||||||||| Sbjct 319 GATCGCCAGTCGGCATCGTTTATAGTCGGAACTACGACGGTATCTGATCGTCTTCGA 375 >seq15409 Length=1146 Score = 95.1 bits (104), Expect = 7e-18 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || || ||| ||| |||| ||||| |||| Sbjct 75 GAACCCAAAGACTTTGGTTTCCCGGTAGCTGCTCGGCGGGTCATGGGAATAACGCCGCCG 134 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| | ||||||||| ||||| || ||||||||||||||||||||||||||| Sbjct 135 GATCGCCAGTCGGCATCGTTTATAGTCGGAACTACGACGGTATCTGATCGTCTTCGA 191 >seq14776 Length=1169 Score = 95.1 bits (104), Expect = 7e-18 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || || ||| ||| |||| ||||| |||| Sbjct 592 GAACCCAAAGACTTTGGTTTCCCGGTAGCTGCTCGGCGGGTCATGGGAATAACGCCGCCG 533 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| | ||||||||| ||||| || ||||||||||||||||||||||||||| Sbjct 532 GATCGCCAGTCGGCATCGTTTATAGTCGGAACTACGACGGTATCTGATCGTCTTCGA 476 >seq11581 Length=1343 Score = 95.1 bits (104), Expect = 7e-18 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || || ||| ||| |||| ||||| |||| Sbjct 347 GAACCCAAAGACTTTGGTTTCCCGGTAGCTGCTCGGCGGGTCATGGGAATAACGCCGCCG 288 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| | ||||||||| ||||| || ||||||||||||||||||||||||||| Sbjct 287 GATCGCCAGTCGGCATCGTTTATAGTCGGAACTACGACGGTATCTGATCGTCTTCGA 231 >seq18916 Length=1046 Score = 91.5 bits (100), Expect = 8e-17 Identities = 92/117 (79%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || || ||| ||| |||| |||||| |||| Sbjct 630 GAACCCAAAGACTTTGGTTTCCCGGTAGCTGCTCGGCG-GTCATGG-GATAACGCCGCCG 573 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| | ||||||||| ||||| || ||||||||||||||||||||||||||| Sbjct 572 GATCGCCAGTCGGCATCGTTTATAGTCGGAACTACGACGGTATCTGATCGTCTTCGA 516 >seq13875 Length=1208 Score = 91.5 bits (100), Expect = 8e-17 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 3 ACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCGA 62 |||||||||||||| |||| || || ||| ||| |||| ||||| |||| || Sbjct 419 ACCCAAAGACTTTGGTTTCCCGGTAGCTGCTCGGCGGGTCATGGGAATAACGCCGCCGGA 478 Query 63 TCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || | ||||||||| ||||| || ||||||||||||||||||||||||||| Sbjct 479 TCGCCAGTCGGCATCGTTTATAGTCGGAACTACGACGGTATCTGATCGTCTTCGA 533 >seq4683 Length=4554 Score = 89.7 bits (98), Expect = 3e-16 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 4 CCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCGAT 63 ||||||||||||| |||| || || ||| ||| |||| ||||| |||| ||| Sbjct 12 CCCAAAGACTTTGGTTTCCCGGTAGCTGCTCGGCGGGTCATGGGAATAACGCCGCCGGAT 71 Query 64 CCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 | | ||||||||| ||||| || ||||||||||||||||||||||||||| Sbjct 72 CGCCAGTCGGCATCGTTTATAGTCGGAACTACGACGGTATCTGATCGTCTTCGA 125 >seq16896 Length=1100 Score = 86.0 bits (94), Expect = 3e-15 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||| |||||||||||| |||| || || ||| ||| |||| | ||||| |||| Sbjct 899 GAAGCCAAAGACTTTGGTTTCCCGGTAGCTGCTCGGCGGGTCATGTTAATAACGCCGCCG 958 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| | ||||||||| |||| || ||||||||| ||||||||||||||||| Sbjct 959 GATCGCCAGTCGGCATCTTTTATAGTCGGAACTACGACGCTATCTGATCGTCTTCGA 1015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278344657560