Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq20315 140 1e-30 seq3470 113 2e-22 seq1869 113 2e-22 seq16454 109 2e-21 >seq20315 Length=1015 Score = 140 bits (154), Expect = 1e-30 Identities = 103/120 (86%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 || ||| |||||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 153 TGATGGTACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTG 212 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| || |||||| ||| ||||||||||| ||||| | ||||| ||||||||| Sbjct 213 GTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTCTAGGGGCGA 272 >seq3470 Length=6517 Score = 113 bits (124), Expect = 2e-22 Identities = 197/282 (70%), Gaps = 16/282 (6%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCA- 463 || ||||||||| || |||||||||||||||||| | |||||| ||||| || Sbjct 4176 CGACCCGTCTTGAAATACGGACCAAGGAGTCTAAAACGCGCGCGAGTCGGAGGGTGGCAC 4117 Query 464 -AACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGA 521 || | |||| || |||||||||||| | || | ||| | | | ||| Sbjct 4116 GAAACTCTGCGGCGCAATGAAAGTGAAGGCCGGCGCATCACCG-----GCCCGTC-TCGC 4063 Query 522 CCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGAT 581 ||| | || || ||| | | ||| | |||| | || ||| ||||||||||| Sbjct 4062 CCGCACTTGTCGT----GGAGG---TGGAGCAGGAGCGTGCGTGATGGTACCCGAAAGAT 4010 Query 582 GGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGT 641 ||||||||||||||| |||| | ||||| ||||||||||||||||| || ||| | Sbjct 4009 GGTGAACTATGCCTGGGCAGGGCAAGGCCAGTGGAAACTCTGGTGGAGGTCCGTCGCGAT 3950 Query 642 TCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| ||||||||||| ||| | | ||||| |||| |||| Sbjct 3949 CCTGACGTGCAAATCGGTCGGCTGACCTGGGTCTAGGTGCGA 3908 >seq1869 Length=11662 Score = 113 bits (124), Expect = 2e-22 Identities = 88/105 (84%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 579 GATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGC 638 |||||||||||||||||| |||| ||||||||||||| |||||||||||| || ||| Sbjct 7450 GATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAATCTCTGGTGGAGGTCCGTAGC 7391 Query 639 GGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| ||| ||||||||||| ||||| | ||||| | ||||||| Sbjct 7390 GGTCCTGACGTGCAAATCGCTCGTCCGACCTGGGTCTCGGGGCGA 7346 >seq16454 Length=1112 Score = 109 bits (120), Expect = 2e-21 Identities = 90/107 (84%), Gaps = 2/107 (2%) Strand=Plus/Minus Query 579 GATGGTGAACTATG-CCTGAAT-AGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCA 636 |||||||||||||| |||| |||| |||||||||||||||||||||||||| || | Sbjct 1112 GATGGTGAACTATGGCCTGGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGTCCGTA 1053 Query 637 GCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||| ||| ||||||||||| ||||| | ||||| ||||||||| Sbjct 1052 GCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTCTAGGGGCGA 1006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079545174200