Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq18916 104 3e-20 seq15409 104 3e-20 seq19732 100 3e-19 seq18429 100 3e-19 seq17872 100 3e-19 seq14776 100 3e-19 seq13875 100 3e-19 seq4683 86.0 7e-15 seq11581 73.4 5e-11 >seq18916 Length=1046 Score = 104 bits (114), Expect = 3e-20 Identities = 145/193 (75%), Gaps = 9/193 (5%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | ||||||||| |||||||| ||| |||||| |||| Sbjct 368 AAACCAACAAAATAGAACCGGA-GTCCTATTCCATTATTCCCAGCTGGAGTATTCAGGCG 310 Query 70 TAAG-CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCC--GCAC 126 | ||||||||||||||||||||||| |||| ||||| | | | | || || | || Sbjct 309 ACCGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAACG-CTTCGGACCCCCAGGGAC 251 Query 127 AC-CAATGAAG-GCAT-ACGGGCTCACCAAGAGGTAGGGCTGGGTAATGCAGTA-CTCGC 182 || ||| ||| |||| | ||| | || ||| |||||||||| | || ||| ||||| Sbjct 250 ACTCAACTAAGAGCATCAAGGGAGCGCCGTGAGCAAGGGCTGGGTCAGGCGGTAGCTCGC 191 Query 183 CGTGAGGCGGACC 195 | | |||||||| Sbjct 190 CTCGCGGCGGACC 178 >seq15409 Length=1146 Score = 104 bits (114), Expect = 3e-20 Identities = 145/193 (75%), Gaps = 8/193 (4%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | ||||||||| |||||||| ||| |||||| |||| Sbjct 339 AAACCAACAAAATAGAACCGGA-GTCCTATTCCATTATTCCCAGCTGGAGTATTCAGGCG 397 Query 70 TAAG-CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCT-GGTTCCTCCGCACA 127 | ||||||||||||||||||||||| |||| ||||| | | | || || | | ||| Sbjct 398 ACCGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAACGACTTCGGACCCCCAGGACA 457 Query 128 C-CAATGAAG-GCAT-ACGGGCTCACCAAGAG-GTAGGGCTGGGTAATGCAGTA-CTCGC 182 | ||| ||| |||| | ||| | || ||| |||||||||| | || ||| ||||| Sbjct 458 CTCAACTAAGAGCATCAAGGGAGCGCCGTGAGACAAGGGCTGGGTCAGGCGGTAGCTCGC 517 Query 183 CGTGAGGCGGACC 195 | | |||||||| Sbjct 518 CTCGCGGCGGACC 530 >seq19732 Length=1028 Score = 100 bits (110), Expect = 3e-19 Identities = 143/192 (74%), Gaps = 7/192 (4%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | ||||||||| |||||||| ||| |||||| |||| Sbjct 511 AAACCAACAAAATAGAACCGGA-GTCCTATTCCATTATTCCCAGCTGGAGTATTCAGGCG 453 Query 70 TAAG-CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCACAC 128 | ||||||||||||||||||||||| |||| ||||| | || || | | |||| Sbjct 452 ACCGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAACGCTTCGGACCCCCAGGACAC 393 Query 129 -CAATGAAG-GCAT-ACGGGCTCACCAAGAG-GTAGGGCTGGGTAATGCAGTA-CTCGCC 183 ||| ||| |||| | ||| | || ||| |||||||||| | || ||| |||||| Sbjct 392 TCAACTAAGAGCATCAAGGGAGCGCCGTGAGACAAGGGCTGGGTCAGGCGGTAGCTCGCC 333 Query 184 GTGAGGCGGACC 195 | |||||||| Sbjct 332 TCGCGGCGGACC 321 >seq18429 Length=1059 Score = 100 bits (110), Expect = 3e-19 Identities = 143/192 (74%), Gaps = 7/192 (4%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | ||||||||| |||||||| ||| |||||| |||| Sbjct 158 AAACCAACAAAATAGAACCGGA-GTCCTATTCCATTATTCCCAGCTGGAGTATTCAGGCG 216 Query 70 TAAG-CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCACAC 128 | ||||||||||||||||||||||| |||| ||||| | || || | | |||| Sbjct 217 ACCGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAACGCTTCGGACCCCCAGGACAC 276 Query 129 -CAATGAAG-GCAT-ACGGGCTCACCAAGAG-GTAGGGCTGGGTAATGCAGTA-CTCGCC 183 ||| ||| |||| | ||| | || ||| |||||||||| | || ||| |||||| Sbjct 277 TCAACTAAGAGCATCAAGGGAGCGCCGTGAGACAAGGGCTGGGTCAGGCGGTAGCTCGCC 336 Query 184 GTGAGGCGGACC 195 | |||||||| Sbjct 337 TCGCGGCGGACC 348 >seq17872 Length=1071 Score = 100 bits (110), Expect = 3e-19 Identities = 143/192 (74%), Gaps = 7/192 (4%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | ||||||||| |||||||| ||| |||||| |||| Sbjct 523 AAACCAACAAAATAGAACCGGA-GTCCTATTCCATTATTCCCAGCTGGAGTATTCAGGCG 581 Query 70 TAAG-CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCACAC 128 | ||||||||||||||||||||||| |||| ||||| | || || | | |||| Sbjct 582 ACCGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAACGCTTCGGACCCCCAGGACAC 641 Query 129 -CAATGAAG-GCAT-ACGGGCTCACCAAGAG-GTAGGGCTGGGTAATGCAGTA-CTCGCC 183 ||| ||| |||| | ||| | || ||| |||||||||| | || ||| |||||| Sbjct 642 TCAACTAAGAGCATCAAGGGAGCGCCGTGAGACAAGGGCTGGGTCAGGCGGTAGCTCGCC 701 Query 184 GTGAGGCGGACC 195 | |||||||| Sbjct 702 TCGCGGCGGACC 713 >seq14776 Length=1169 Score = 100 bits (110), Expect = 3e-19 Identities = 143/192 (74%), Gaps = 7/192 (4%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | ||||||||| |||||||| ||| |||||| |||| Sbjct 329 AAACCAACAAAATAGAACCGGA-GTCCTATTCCATTATTCCCAGCTGGAGTATTCAGGCG 271 Query 70 TAAG-CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCACAC 128 | ||||||||||||||||||||||| |||| ||||| | || || | | |||| Sbjct 270 ACCGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAACGCTTCGGACCCCCAGGACAC 211 Query 129 -CAATGAAG-GCAT-ACGGGCTCACCAAGAG-GTAGGGCTGGGTAATGCAGTA-CTCGCC 183 ||| ||| |||| | ||| | || ||| |||||||||| | || ||| |||||| Sbjct 210 TCAACTAAGAGCATCAAGGGAGCGCCGTGAGACAAGGGCTGGGTCAGGCGGTAGCTCGCC 151 Query 184 GTGAGGCGGACC 195 | |||||||| Sbjct 150 TCGCGGCGGACC 139 >seq13875 Length=1208 Score = 100 bits (110), Expect = 3e-19 Identities = 143/192 (74%), Gaps = 7/192 (4%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | ||||||||| |||||||| ||| |||||| |||| Sbjct 681 AAACCAACAAAATAGAACCGGA-GTCCTATTCCATTATTCCCAGCTGGAGTATTCAGGCG 739 Query 70 TAAG-CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCACAC 128 | ||||||||||||||||||||||| |||| ||||| | || || | | |||| Sbjct 740 ACCGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAACGCTTCGGACCCCCAGGACAC 799 Query 129 -CAATGAAG-GCAT-ACGGGCTCACCAAGAG-GTAGGGCTGGGTAATGCAGTA-CTCGCC 183 ||| ||| |||| | ||| | || ||| |||||||||| | || ||| |||||| Sbjct 800 TCAACTAAGAGCATCAAGGGAGCGCCGTGAGACAAGGGCTGGGTCAGGCGGTAGCTCGCC 859 Query 184 GTGAGGCGGACC 195 | |||||||| Sbjct 860 TCGCGGCGGACC 871 >seq4683 Length=4554 Score = 86.0 bits (94), Expect = 7e-15 Identities = 80/99 (81%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| | | ||||||||| |||||||| ||| |||||| |||| Sbjct 273 AAACCAACAAAATAGAACTGGA-GTCCTATTCCATTATTCCCAGCTGGAGTATTCAGGCG 331 Query 70 TAAG-CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 | ||||||||||||||||||||||| |||| ||||| Sbjct 332 ACCGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAA 370 >seq11581 Length=1343 Score = 73.4 bits (80), Expect = 5e-11 Identities = 68/84 (81%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | ||||||||| |||||||| ||| |||||| |||| Sbjct 83 AAACCAACAAAATAGAACCGGA-GTCCTATTCCATTATTCCCAGCTGGAGTATTCAGGCG 25 Query 70 TAAG-CCTGCTTTGAACACTCTAA 92 | ||||||||||||||||||| Sbjct 24 ACCGGCCTGCTTTGAACACTCTAA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595077737736