Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq19732 109 6e-22 seq18916 109 6e-22 seq18429 109 6e-22 seq17872 109 6e-22 seq15409 109 6e-22 seq14776 109 6e-22 seq13875 109 6e-22 seq4683 105 7e-21 seq11581 82.4 8e-14 >seq19732 Length=1028 Score = 109 bits (120), Expect = 6e-22 Identities = 131/174 (75%), Gaps = 3/174 (2%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC-TTTGCTCGAATACATTACCATGG 71 ||||||||||||||||||||| |||||||||||||| | || |||||| | | || Sbjct 414 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCGGTCGCCTGAATACTCCAGCTGGG 473 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATA 131 |||||| ||||||||| | |||||||||||||| ||||| | ||| | | ||||| Sbjct 474 AATAATGGAATAGGAC-TCCGGTTCTATTTTGTTGGTTT-TCGGAACTGTGGCCATGATT 531 Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 || | ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 532 AAGAGGGACGGCCGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 585 >seq18916 Length=1046 Score = 109 bits (120), Expect = 6e-22 Identities = 131/174 (75%), Gaps = 3/174 (2%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC-TTTGCTCGAATACATTACCATGG 71 ||||||||||||||||||||| |||||||||||||| | || |||||| | | || Sbjct 271 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCGGTCGCCTGAATACTCCAGCTGGG 330 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATA 131 |||||| ||||||||| | |||||||||||||| ||||| | ||| | | ||||| Sbjct 331 AATAATGGAATAGGAC-TCCGGTTCTATTTTGTTGGTTT-TCGGAACTGTGGCCATGATT 388 Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 || | ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 389 AAGAGGGACGGCCGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 442 >seq18429 Length=1059 Score = 109 bits (120), Expect = 6e-22 Identities = 131/174 (75%), Gaps = 3/174 (2%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC-TTTGCTCGAATACATTACCATGG 71 ||||||||||||||||||||| |||||||||||||| | || |||||| | | || Sbjct 255 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCGGTCGCCTGAATACTCCAGCTGGG 196 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATA 131 |||||| ||||||||| | |||||||||||||| ||||| | ||| | | ||||| Sbjct 195 AATAATGGAATAGGAC-TCCGGTTCTATTTTGTTGGTTT-TCGGAACTGTGGCCATGATT 138 Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 || | ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 137 AAGAGGGACGGCCGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 84 >seq17872 Length=1071 Score = 109 bits (120), Expect = 6e-22 Identities = 131/174 (75%), Gaps = 3/174 (2%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC-TTTGCTCGAATACATTACCATGG 71 ||||||||||||||||||||| |||||||||||||| | || |||||| | | || Sbjct 620 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCGGTCGCCTGAATACTCCAGCTGGG 561 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATA 131 |||||| ||||||||| | |||||||||||||| ||||| | ||| | | ||||| Sbjct 560 AATAATGGAATAGGAC-TCCGGTTCTATTTTGTTGGTTT-TCGGAACTGTGGCCATGATT 503 Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 || | ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 502 AAGAGGGACGGCCGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 449 >seq15409 Length=1146 Score = 109 bits (120), Expect = 6e-22 Identities = 131/174 (75%), Gaps = 3/174 (2%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC-TTTGCTCGAATACATTACCATGG 71 ||||||||||||||||||||| |||||||||||||| | || |||||| | | || Sbjct 436 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCGGTCGCCTGAATACTCCAGCTGGG 377 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATA 131 |||||| ||||||||| | |||||||||||||| ||||| | ||| | | ||||| Sbjct 376 AATAATGGAATAGGAC-TCCGGTTCTATTTTGTTGGTTT-TCGGAACTGTGGCCATGATT 319 Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 || | ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 318 AAGAGGGACGGCCGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 265 >seq14776 Length=1169 Score = 109 bits (120), Expect = 6e-22 Identities = 131/174 (75%), Gaps = 3/174 (2%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC-TTTGCTCGAATACATTACCATGG 71 ||||||||||||||||||||| |||||||||||||| | || |||||| | | || Sbjct 232 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCGGTCGCCTGAATACTCCAGCTGGG 291 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATA 131 |||||| ||||||||| | |||||||||||||| ||||| | ||| | | ||||| Sbjct 292 AATAATGGAATAGGAC-TCCGGTTCTATTTTGTTGGTTT-TCGGAACTGTGGCCATGATT 349 Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 || | ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 350 AAGAGGGACGGCCGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 403 >seq13875 Length=1208 Score = 109 bits (120), Expect = 6e-22 Identities = 131/174 (75%), Gaps = 3/174 (2%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC-TTTGCTCGAATACATTACCATGG 71 ||||||||||||||||||||| |||||||||||||| | || |||||| | | || Sbjct 778 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCGGTCGCCTGAATACTCCAGCTGGG 719 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATA 131 |||||| ||||||||| | |||||||||||||| ||||| | ||| | | ||||| Sbjct 718 AATAATGGAATAGGAC-TCCGGTTCTATTTTGTTGGTTT-TCGGAACTGTGGCCATGATT 661 Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 || | ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 660 AAGAGGGACGGCCGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 607 >seq4683 Length=4554 Score = 105 bits (116), Expect = 7e-21 Identities = 130/174 (75%), Gaps = 3/174 (2%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC-TTTGCTCGAATACATTACCATGG 71 ||||||||||||||||||||| |||||||||||||| | || |||||| | | || Sbjct 370 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCGGTCGCCTGAATACTCCAGCTGGG 311 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATA 131 |||||| ||||||||| | | |||||||||||| ||||| | ||| | | ||||| Sbjct 310 AATAATGGAATAGGAC-TCCAGTTCTATTTTGTTGGTTT-TCGGAACTGTGGCCATGATT 253 Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 || | ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 252 AAGAGGGACGGCCGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 199 >seq11581 Length=1343 Score = 82.4 bits (90), Expect = 8e-14 Identities = 116/159 (73%), Gaps = 3/159 (2%) Strand=Plus/Plus Query 28 TTAGAGCGTTCAAAGCAGGCC-TTTGCTCGAATACATTACCATGGAATAATAGAATAGGA 86 |||||| |||||||||||||| | || |||||| | | |||||||| |||||||| Sbjct 1 TTAGAGTGTTCAAAGCAGGCCGGTCGCCTGAATACTCCAGCTGGGAATAATGGAATAGGA 60 Query 87 CGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAAATACGGATAGTCGG 146 | | |||||||||||||| ||||| | ||| | | ||||| || | ||| | ||| Sbjct 61 C-TCCGGTTCTATTTTGTTGGTTT-TCGGAACTGTGGCCATGATTAAGAGGGACGGCCGG 118 Query 147 GGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 ||| | ||||| | | |||||||||||||||| Sbjct 119 GGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511894828160