Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq20071 188 1e-45 seq16896 188 1e-45 seq17849 185 2e-44 seq18916 104 4e-20 seq128 73.4 7e-11 >seq20071 Length=1020 Score = 188 bits (208), Expect = 1e-45 Identities = 199/258 (77%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 876 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACACGA-GATTGAG-CAATAACAGGTCTGTG 819 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||||||||||||||||| | || || || | | Sbjct 818 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGAATGGTTCAGCGTGTGCCTAC 759 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| |||| |||||| | | || | | ||||| |||||| | | |||| Sbjct 758 CCTACGCCGGCAGGTGCGGGTAACCCGATGAACCCCATTCGTGATGGGGACTGGGGATTG 699 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | |||||||||| || |||||| | | ||||| ||| |||||||||| Sbjct 698 CAATTATTCCCCACGAACGAGGAATTCCCAGTAAGTGTGGGTCATAAGCTCGCGTTGATT 639 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 638 AAGTCCCTGCCCTTTGTA 621 >seq16896 Length=1100 Score = 188 bits (208), Expect = 1e-45 Identities = 199/258 (77%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 625 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACACGA-GATTGAG-CAATAACAGGTCTGTG 568 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||||||||||||||||| | || || || | | Sbjct 567 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGAATGGTTCAGCGTGTGCCTAC 508 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| |||| |||||| | | || | | ||||| |||||| | | |||| Sbjct 507 CCTACGCCGGCAGGTGCGGGTAACCCGATGAACCCCATTCGTGATGGGGACTGGGGATTG 448 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | |||||||||| || |||||| | | ||||| ||| |||||||||| Sbjct 447 CAATTATTCCCCACGAACGAGGAATTCCCAGTAAGTGTGGGTCATAAGCTCGCGTTGATT 388 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 387 AAGTCCCTGCCCTTTGTA 370 >seq17849 Length=1072 Score = 185 bits (204), Expect = 2e-44 Identities = 199/258 (77%), Gaps = 4/258 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 707 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACACGA-GATTGAG-CAATAACAGGTCTGTG 650 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||||||||||||||||| | || || || | | Sbjct 649 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGAATGGTTCAGCGTGTGCCTAC 590 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| |||| |||||| | | || | | ||||| |||||| | | |||| Sbjct 589 CCTACGCCGGCAGGTGCGGGTAACCCGATGAACCCCATTCGTGATGGGGACTGGGGATTG 530 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | |||||||||| || |||||| | | ||||| ||| |||||||||| Sbjct 529 CAATTATT-CCCACGAACGAGGAATTCCCAGTAAGTGTGGGTCATAAGCTCGCGTTGATT 471 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 470 AAGTCCCTGCCCTTTGTA 453 >seq18916 Length=1046 Score = 104 bits (114), Expect = 4e-20 Identities = 111/143 (78%), Gaps = 3/143 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 905 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACACGA-GATTGAG-CAATAACAGGTCTGTG 962 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||||||||||||||||| | || || || | | Sbjct 963 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGAATGGTTCAGCGTGTGCCTAC 1022 Query 191 CCTTGGCCGGAAGGTCTGGGTAA 213 ||| ||||| |||| |||||| Sbjct 1023 CCTACGCCGGCAGGTGCGGGTAA 1045 >seq128 Length=2028236 Score = 73.4 bits (80), Expect = 7e-11 Identities = 58/67 (87%), Gaps = 2/67 (3%) Strand=Plus/Minus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| ||||||||||||| |||||||||||||||| | ||| |||| ||||||| | Sbjct 129987 AGATTGAG-CAATAACAGGTCTCTGATGCCCTTAGATGTCCAGGG-CGCAAGCGCGCTGC 129930 Query 166 ACTGACA 172 ||| ||| Sbjct 129929 ACTAACA 129923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946999155712