Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq12457 111 3e-22 seq10993 111 3e-22 seq10163 111 3e-22 seq6733 111 3e-22 seq1869 82.4 1e-13 >seq12457 Length=1283 Score = 111 bits (122), Expect = 3e-22 Identities = 95/115 (83%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 894 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 951 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCA 115 | |||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 952 GGTGCGAAGCTACCATCTGCTGGCTTATGACTGAACGCCTCTAAGTCAGAATCCA 1006 >seq10993 Length=1390 Score = 111 bits (122), Expect = 3e-22 Identities = 95/115 (83%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 391 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 448 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCA 115 | |||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 449 GGTGCGAAGCTACCATCTGCTGGCTTATGACTGAACGCCTCTAAGTCAGAATCCA 503 >seq10163 Length=1477 Score = 111 bits (122), Expect = 3e-22 Identities = 95/115 (83%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 242 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 185 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCA 115 | |||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 184 GGTGCGAAGCTACCATCTGCTGGCTTATGACTGAACGCCTCTAAGTCAGAATCCA 130 >seq6733 Length=2642 Score = 111 bits (122), Expect = 3e-22 Identities = 95/115 (83%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 422 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 479 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCA 115 | |||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 480 GGTGCGAAGCTACCATCTGCTGGCTTATGACTGAACGCCTCTAAGTCAGAATCCA 534 >seq1869 Length=11662 Score = 82.4 bits (90), Expect = 1e-13 Identities = 89/115 (77%), Gaps = 5/115 (4%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| || | |||||| | || || | || | || |||| || || | Sbjct 4152 GTACGAGAGGAACAGCAGG-TTCAGAC-ATTTAGTGTATGTGCTTGGCTGAGGAGCCAAT 4095 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCA 115 | |||||||||||||||||||| || || ||||| ||||||||||||||||| Sbjct 4094 GGTGCGAAGCTACCATCTGCTGGCTTGTGACTGAA---CTCTAAGTCAGAATCCA 4043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819031725056