Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq797 123 2e-23 seq121 120 2e-22 >seq797 Length=31933 Score = 123 bits (136), Expect = 2e-23 Identities = 117/146 (80%), Gaps = 4/146 (3%) Strand=Plus/Plus Query 66326 TGTTCT--ACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTG 66383 |||||| ||||| |||||| |||||||| ||||||||||||||||||||||| |||| Sbjct 20540 TGTTCTCAACACGTTTCATAAAAAGATCAGGAATCCAGAGGGCGTAGAAGAGATCCCGTG 20599 Query 66384 CTCGTTGCTCCTCAATGCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCA 66442 ||| |||||||| | || ||| || || ||| || | || |||||||| || | Sbjct 20600 CTCTCTGCTCCTCTTTCCCAGTG-TTCTTTTTCAACTCCAAAAAATCAAAGATATCCAGA 20658 Query 66443 TGCCATGGTTCCAGGTAGATGGCGAA 66468 ||||| |||||||||||||||||||| Sbjct 20659 TGCCACGGTTCCAGGTAGATGGCGAA 20684 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||||||||| || || || || ||||| |||||| | ||||| ||||||||||| || Sbjct 16690 GGTATACTCCACTATCTCTGTACACAGGTTACTGGACTTAATGGTTCCCAAATTCTGGTG 16749 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || |||| | ||||| || || ||||||||||||||||| ||||| ||||| || Sbjct 16750 GTTGGTCTTTCTGTTGCAGGCGTCTTTGTACATCATGTACGGGGTGCCAGTCTCTGTCTG 16809 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 |||||||| || || | ||| || Sbjct 16810 TGACTCAATAATAGCATACCACAG 16833 Score = 84.2 bits (92), Expect = 2e-11 Identities = 110/147 (75%), Gaps = 4/147 (3%) Strand=Plus/Plus Query 65157 CATAGAAATGCATCGATGATAATTTTGCA-TAATTCGGCTCGGCCACATGCATATTCAAC 65215 ||||||| ||||| | || | | ||||| || || || || || | || ||||||| | Sbjct 10471 CATAGAAGTGCAT-GCTGGTCAGTTTGCCGTAGTTAGGTTCTGCAATGTGGATATTCATC 10529 Query 65216 GACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATGTCAATGATACGACGTC-C 65274 |||||||||||||||||||| ||| ||||| || ||||| | ||| ||| | || Sbjct 10530 GACTGACTCTGATCGATGTAGGCACCGCGATCAGCTGCCATCTTAATAATA-GTTTTCTG 10588 Query 65275 CGATATCTCCCAGACGGTCTTGTACAG 65301 || || |||||||| || |||||||| Sbjct 10589 TGAGATTTCCCAGACAGTTTTGTACAG 10615 >seq121 Length=2118225 Score = 120 bits (132), Expect = 2e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 ||||||||||| ||||||||||||||| |||| || ||||| || || || ||||||| Sbjct 637677 TGGAACGTTTCAGTCAGGAGGTGCAAGTGACGGAAGCCCGTTGCTTTTATGGTTTCCAGA 637736 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 ||||||||||||| | || || || ||||||||| | || ||||| || ||||||| || Sbjct 637737 TTGCCATGGAGAACATTCATTCAGAAATGTACAGTCTCCTTATCGACACCTACATCAAGG 637796 Query 61376 A 61376 | Sbjct 637797 A 637797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397465258986560