Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq1633 150 3e-34 seq2637 109 8e-22 seq4126 107 3e-21 seq398 93.3 6e-17 seq531 77.0 5e-12 >seq1633 Length=540360 Score = 150 bits (166), Expect = 3e-34 Identities = 181/237 (76%), Gaps = 7/237 (3%) Strand=Plus/Plus Query 4 CAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTC 63 |||||||||||||| || ||||| ||||||| ||||| | | |||| | |||||||||| Sbjct 138320 CAAAGGGCAGGGACTTAATCAACACGAGCTT-ATGACCCACACTTATTGGGAATTTCCTT 138378 Query 64 GTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TTACC 122 ||| | | || ||||||||| | ||||| |||| || ||||| | ||||| Sbjct 138379 GTTCATGGGAAATAATTGCAATCCCCGATCCCTATCATGAATGGGGTTCAACGGGTTACC 138438 Query 123 CGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT-CAGTGTAGCGCGCGTGCGGC 181 || ||||||||| ||| | | || | ||| | ||| |||||||||||| |||| || Sbjct 138439 CGCACCTGTCGGTGTAGGGTAGACACATGCTGA-TCCATTCAGTGTAGCGCGTGTGCAGC 138497 Query 182 CCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238 || || ||| ||||||||||||||||||||||||| ||||| || |||| ||||| Sbjct 138498 CCCGA-CATTTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGG-CTAAA 138551 >seq2637 Length=283777 Score = 109 bits (120), Expect = 8e-22 Identities = 132/173 (76%), Gaps = 5/173 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || | ||||||||||| ||||| ||| |||||| |||| ||| Sbjct 208778 GTACAAAGGGCAGGGACTTAATTAACGCGAGCTT-ATGACCCGCACTTACTGGGAA-TTC 208721 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG-ATGAAATTTCAAAGATT 119 |||||| | | || ||||| ||| || ||||| |||||| ||| || | | || Sbjct 208720 CTCGTTCATGGGAAATAATTGTAATCCTCGATCCCTATCACGAATGGGGTTCAACGGGTT 208661 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACA-TCAGTGTAGCG 171 ||||| ||||||||| ||| | | || || || || || ||||||||||| Sbjct 208660 ACCCGCACCTGTCGGTGTAGGGTAGACACACGCTG-ATCCATTCAGTGTAGCG 208609 >seq4126 Length=108736 Score = 107 bits (118), Expect = 3e-21 Identities = 107/135 (79%), Gaps = 3/135 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||||||||| ||||| ||| |||||| |||| ||| Sbjct 50560 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCACTTACTGGGAA-TTC 50503 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG-ATGAAATTTCAAAGATT 119 |||||| | | || ||||||||| | ||||| |||||| ||| || | | || Sbjct 50502 CTCGTTCACGGGAAATAATTGCAATCCCCGATCCCTATCACGAATGGGGTTCAACGGGTT 50443 Query 120 ACCCGGACCTGTCGG 134 ||||| ||||||||| Sbjct 50442 ACCCGCACCTGTCGG 50428 >seq398 Length=1469241 Score = 93.3 bits (102), Expect = 6e-17 Identities = 65/73 (89%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220 ||||||||||||| |||| |||| | |||||||||||||||||||||||||||||| ||| Sbjct 552526 TCAGTGTAGCGCGTGTGCAGCCCCGCACATCTAAGGGCATCACAGACCTGTTATTG-CTC 552468 Query 221 AAACTTCCGTGGC 233 || || | ||||| Sbjct 552467 AATCTCCTGTGGC 552455 >seq531 Length=1227393 Score = 77.0 bits (84), Expect = 5e-12 Identities = 86/110 (78%), Gaps = 5/110 (5%) Strand=Plus/Plus Query 110 TTCAA-AGATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT-CAGTGT 167 ||||| || ||||||| ||||||| | ||| | | || | ||| | ||| |||||| Sbjct 536041 TTCAACAGGTTACCCGCACCTGTCAGTGGAGGGAAGACACACACTGA-TCCATTCAGTGT 536099 Query 168 AGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 ||| | ||| |||| | ||||||||||||||||||||||||||||||| Sbjct 536100 AGCACA--TGCAGCCCTGGACATCTAAGGGCATCACAGACCTGTTATTGC 536147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751833763585