Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq4126 201 2e-49 seq1483 181 2e-43 seq3524 138 2e-30 seq50 125 1e-26 seq838 114 2e-23 seq46 89.7 9e-16 seq1709 73.4 7e-11 >seq4126 Length=108736 Score = 201 bits (222), Expect = 2e-49 Identities = 212/275 (77%), Gaps = 3/275 (1%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTT 98 |||| ||| |||| |||| | |||| || | ||||||||||||||||||||||||| Sbjct 92820 ATGCTCTTAACTGAGTGTCCTGGGGGTCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTT 92879 Query 99 CAAAGCAGGCCTTT-GCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTC 157 ||||||||||| | ||| | |||| | ||| |||||||| ||||||||| | |||||| Sbjct 92880 CAAAGCAGGCCAGTCGCTTGGATACTTCAGCTAGGAATAATGGAATAGGAC-TCCGGTTC 92938 Query 158 TATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTA 217 |||||||||||||| | || | | |||||||| ||||| || |||||| | ||| Sbjct 92939 TATTTTGTTGGTTTTCGGAACTGGGGCCATGATTAAGAGGGACAGCCGGGGGCATTCGTA 92998 Query 218 TTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTC 277 || | ||||||||||||||||||| | ||||| || | |||||||| || Sbjct 92999 TTGTGCCGCCAGAGGTGAAATTCTTGGACCGGTGCAAGACGGACAAAAGCGAAAGCATTT 93058 Query 278 ACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 ||||| |||||||||||||||| |||||||||| Sbjct 93059 GCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 93092 Score = 75.2 bits (82), Expect = 2e-11 Identities = 59/71 (83%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTT 98 |||| ||| |||| |||| | |||| || | ||||||||||||||||||||||||| Sbjct 49648 ATGCTCTTAACTGAGTGTCCTGGGGGTCCGAAGCATTTACTTTGAAAAAATTAGAGTGTT 49707 Query 99 CAAAGCAGGCC 109 ||||||||||| Sbjct 49708 CAAAGCAGGCC 49718 >seq1483 Length=602516 Score = 181 bits (200), Expect = 2e-43 Identities = 209/276 (76%), Gaps = 4/276 (1%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTG-AAAAAATTAGAGTGT 97 |||| ||| |||| |||| | |||| || | ||||||||| ||||||||||||||| Sbjct 473683 ATGCTCTTAACTGAGTGTCCTGGGGGTCCGAAGCGTTTACTTTGGAAAAAATTAGAGTGT 473624 Query 98 TCAAAGCAGGCCTTT-GCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTT 156 |||||||||||| | ||| | |||| | ||| ||||||||| ||||||||| | ||||| Sbjct 473623 TCAAAGCAGGCCGGTCGCTTGGATACTTCAGCTTGGAATAATGGAATAGGAC-TCCGGTT 473565 Query 157 CTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGT 216 ||||||||||||||| | || | | |||||||| ||||| | |||||| | || Sbjct 473564 CTATTTTGTTGGTTTTCGGAACTGGGGCCATGATTAAGAGGGACGGCCGGGGGCATTCGT 473505 Query 217 ATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTT 276 ||| | |||||||||||||||||| |||| || | |||||||| || Sbjct 473504 ATTGTGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGATGGACAAAAGCGAAAGCATT 473445 Query 277 CACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 ||||| |||||||||||||||| |||||||||| Sbjct 473444 TGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 473410 >seq3524 Length=165835 Score = 138 bits (152), Expect = 2e-30 Identities = 166/222 (75%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 93 AGTGTTCAAAGCAGGCCTTT-GCTCGAATACATTAGCATGGAATAATAGAATAGGACGTG 151 ||||||||||||||||| | ||| | |||| | ||| |||||||| ||||||||| | Sbjct 41980 AGTGTTCAAAGCAGGCCAGTCGCTTGGATACTTCAGCTAGGAATAATGGAATAGGAC-TC 41922 Query 152 CGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTG 211 | ||||||||||||||||| | | || | | |||||||| |||||| | ||| | Sbjct 41921 TGTTTCTATTTTGTTGGTTTTTGGAACTGGGGCCATGATTAAGAGGGATGGCTGGGAGCA 41862 Query 212 TCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAA 271 | ||||| || | ||| |||||||||||| | ||||| ||| | |||||| Sbjct 41861 TTCGTATTGTGCTGCTAAAGGAGAAATTCTTGGACTGGCGCAAGACGAACAAAAGCGAAA 41802 Query 272 GCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 || || ||||| |||||||||||||| | ||||||||||| Sbjct 41801 GCATTTGCCAAGAATGTTTTCATTAATTA-AGAACGAAAGTT 41761 >seq50 Length=3219752 Score = 125 bits (138), Expect = 1e-26 Identities = 134/173 (77%), Gaps = 3/173 (2%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC-CTTTGCTCGAATACATTAGCATGG 132 ||||||||||||||||||||||||||||||||||| | || | |||| | ||| || Sbjct 2961265 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTGGTCACTTGGATACTTCAGCTAGG 2961324 Query 133 AATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTA 192 ||||| ||| ||||| | ||||||||||||||||||||| | || | | ||||||| Sbjct 2961325 GATAATGGAAGAGGAC-TCCGGTTCTATTTTGTTGGTTTC-GGAACTGGGGCCATGATTA 2961382 Query 193 ATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 245 | ||||| | |||||| | ||||| || ||||||||| |||||||| Sbjct 2961383 AGAGGGACGGCCGGGGGCATTTGTATTGTGCTGCTAGAGGTGAAGTTCTTGGA 2961435 >seq838 Length=920472 Score = 114 bits (126), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 9/231 (4%) Strand=Plus/Minus Query 83 AAAAAATTA-GAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAATAATAGA 141 ||||||||| |||||||||||||||| || |||||| | ||| ||||||| || Sbjct 88265 AAAAAATTAAGAGTGTTCAAAGCAGGGCT------GAATACTTCAGCTAAGAATAATGGA 88212 Query 142 ATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATA 201 ||||||| | | ||||||||| | | |||| ||| || | | |||||||| |||| Sbjct 88211 ATAGGAC-TCCAGTTCTATTTAGCTAGTTTTTAGAACTGGGGCCATGATTAAGGAGGATG 88153 Query 202 GTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAAC 261 | ||||| | ||||| | |||||||||||||||||| ||||| ||| Sbjct 88152 GCCGGGGACATTTGTATTGTGCCGCTAGAGGTGAAATTCTTGGACCAGCACAAGACAAAC 88093 Query 262 TACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 | | ||| || || ||||| || ||||||||||||| |||| ||||| Sbjct 88092 AAAAGTGAAGGCATTTGCCAAGAATATTTTCATTAATCA-AGAACAAAAGT 88043 >seq46 Length=3259902 Score = 89.7 bits (98), Expect = 9e-16 Identities = 185/269 (69%), Gaps = 11/269 (4%) Strand=Plus/Minus Query 50 TGGGTGTGCCGGGGAGCCAGGACTTTTACTTTG--AAAAAATTAGAGTGTTCAAAGCAGG 107 || |||||| ||| | ||| | ||||||||| |||||| | ||||| ||||| ||| Sbjct 633340 TGTGTGTGCTGGGTATCCAAAGCATTTACTTTGGGAAAAAAAAATAGTGTGCAAAGGAGG 633281 Query 108 CCTTTGCTC-GAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTT 166 || | || || | | | ||| |||||||||||||||| || ||||||||| | Sbjct 633280 CCAATCATCTGACTGCTTCAGCTACAAATAATAGAATAGGAC---TGGCTCTATTTTGAT 633224 Query 167 GGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGT 226 | ||| || || | || ||||||| ||||| ||| | || | ||||| || Sbjct 633223 GTTTTTCAGAACTGGGGTCGTGATTAAGGGGGATGGTCAGAGGCATTGGTATT---GTG- 633168 Query 227 CAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGAT 286 || || ||||||||||| | | |||| ||| | |||||| || ||||| | Sbjct 633167 CACAGATGAAATTCTTGCACTAGCATAAGATGAACAAAAATGAAAGCATTTGCCAAGAAG 633108 Query 287 GTTTTCATTAATCAGTGAACGAAAGTTAG 315 |||||| ||| || |||| |||||||| Sbjct 633107 ATTTTCACTAACCA-AGAACAAAAGTTAG 633080 >seq1709 Length=511235 Score = 73.4 bits (80), Expect = 7e-11 Identities = 120/171 (70%), Gaps = 13/171 (8%) Strand=Plus/Plus Query 135 TAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAAT 194 |||| |||||| || | | |||||||||||||| || || || | | || ||||| Sbjct 502758 TAATGGAATAGTAC-TCTGTTTCTATTTTGTTGGCTTTCAGAACTGGGGCCATAATTAAG 502816 Query 195 AGGGATAGTCGGGGGTGTCAGTATTCA-ATTGTC-----AGAGGTGAAATTCTTGGATTT 248 ||||| || ||||| ||||| ||||| |||||||||||||||||| Sbjct 502817 AGGGACAGCTGGGGGC------ATTCATATTGTGCCACTAGAGGTGAAATTCTTGGACCG 502870 Query 249 ATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATC 299 | |||| ||| | || ||||| || ||||| |||||||||||||| Sbjct 502871 GTGCAAGATGAACAAAAGCAAAAGCATTTGCCAAGATTGTTTTCATTAATC 502921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914991160512