Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq2637 131 7e-28 seq4126 122 4e-25 seq1633 116 2e-23 seq695 111 7e-22 seq1566 105 3e-20 seq37 98.7 4e-18 seq160 93.3 2e-16 seq21 93.3 2e-16 seq197 78.8 4e-12 >seq2637 Length=283777 Score = 131 bits (144), Expect = 7e-28 Identities = 98/115 (85%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| Sbjct 211264 GGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCAAAGCCAGAGGAAACTCTGGTGGA 211323 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || || |||||| ||| ||| ||||||| || || | ||||||||||||||| Sbjct 211324 GGTCCGTAGCGGTCCTGACGTACAAATCGGTCATCCGACCTGGGTATAGGGGCGA 211378 Score = 104 bits (114), Expect = 1e-19 Identities = 110/144 (76%), Gaps = 1/144 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || ||| ||||| | | ||||| ||||||| Sbjct 210498 GAGTCGGGTTGTTTGGGAATGCAGCCCAAAGCGGGTGGTAAGCTCCATCTAAGGCTAAAT 210557 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATG-AAAAGCACTTTGGA 158 | ||| ||||| |||| ||||||| || | ||||| || |||| |||||| | Sbjct 210558 ACCGGCACAAGACCAATAGTCGACAAGTACCGTAAGGGAAAGTTGAAAAAAAACTTTGAA 210617 Query 159 AAGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || |||||||| Sbjct 210618 GAGAGAGTTCAAGAGGACGTGAAA 210641 >seq4126 Length=108736 Score = 122 bits (134), Expect = 4e-25 Identities = 96/115 (83%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 51001 GGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGA 51060 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || || |||||| ||| | ||||||| ||||| | | |||||||||| || Sbjct 51061 GGTCCGTAGCGGTCCTGACATGCAAATTTTTCGTCCGACCTTGGTATAGGGGTGA 51115 Score = 122 bits (134), Expect = 4e-25 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || || |||||| | | ||||| ||||||| Sbjct 95349 GAGTCGGGTTGTTTGGGAATGCAGCCCAAAGCAGGTGGTAAACTCCATCTAAGGCTAAAT 95408 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| |||||||| || ||||||| || | ||||| ||||||| |||||| | Sbjct 95409 ACCGGCACGAGACCGAAAGTCGACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 95468 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| ||||| ||| || || Sbjct 95469 AGAGAGTTCAAGAGGGCGTGAAACCGTTGAGAGGTAAACG 95508 >seq1633 Length=540360 Score = 116 bits (128), Expect = 2e-23 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 137138 GAGTCGGGTTGTTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 137079 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 137078 ACCGGCACGAGACCGATAGTCGACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 137019 Query 160 AGAGAGTTAAAAAG 173 |||||||| || || Sbjct 137018 AGAGAGTTCAAGAG 137005 >seq695 Length=1045870 Score = 111 bits (122), Expect = 7e-22 Identities = 87/104 (84%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 578 AGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAG 637 ||||||||||||||||||| |||| |||||||||||||||||||||||||| || || Sbjct 655452 AGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGTCCGTAG 655511 Query 638 CGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 | || ||| ||||||||| | || || | ||||||||||||| Sbjct 655512 CAGTCCTGACGTGCAAATTGGTCATCCGACCTGGGTATAGGGGC 655555 >seq1566 Length=565029 Score = 105 bits (116), Expect = 3e-20 Identities = 103/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | ||||||| || | |||| |||||||| ||||||||| ||| ||||||||| Sbjct 160895 GAGCATGAGCATACATGATAAGACCTGAAAGATGATGAACTATGTCTGGGCAGGGTGAAG 160954 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 ||||| |||||||||||||||| | || || ||| ||||||||| || || | Sbjct 160955 CCAGACGAAACTCTGGTGGAGGTCCATAGTAGTCCTGATGTGCAAATCAGTCTTCTGACC 161014 Query 669 TGGGTATAGGGGC 681 ||||||||||||| Sbjct 161015 TGGGTATAGGGGC 161027 >seq37 Length=3484512 Score = 98.7 bits (108), Expect = 4e-18 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 558 CATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAA 617 |||| || | ||||| |||||||||||||||||||||| |||| || |||||| || Sbjct 1903300 CATATGTGATAGGACCTGAAAGATGGTGAACTATGCCTGGTCAGGGCAAAACCAGAGAAA 1903359 Query 618 ACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAG 677 ||||| ||||||| || ||| ||| || | |||||||| || | | ||||||||| Sbjct 1903360 ACTCTAGTGGAGGGTCACAGTGGTCCTAACATGCAAATCAGTCATTTGACCTGGGTATAG 1903419 Query 678 GGGC 681 |||| Sbjct 1903420 GGGC 1903423 >seq160 Length=2190066 Score = 93.3 bits (102), Expect = 2e-16 Identities = 98/128 (77%), Gaps = 2/128 (2%) Strand=Plus/Minus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 |||| ||| ||| | || | ||||||||||||||||| |||| ||| |||||||||| Sbjct 805900 AGAGTATATCTGATAAGATCTGAAAGATGGTGAACTATACCTGGGCAGGATGAAGCCAGA 805841 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 ||||| ||| || ||| | ||| || || || |||||||| | ||| || ||||| Sbjct 805840 GGAAA--CTGATGAAGGTCTGTAGCAGTCCTAGCATGCAAATCTGTTGTCCAACCTGGGT 805783 Query 674 ATAGGGGC 681 |||||||| Sbjct 805782 ATAGGGGC 805775 >seq21 Length=4470829 Score = 93.3 bits (102), Expect = 2e-16 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||| ||| | || |||| |||||| | | ||||| ||||||| Sbjct 113431 GAGTCGGGTTGTTTGGGAATGTAGCCCAAAGTGGGTGGTAAACTCCATCTAAGGCTAAAT 113490 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAA 148 | ||| ||||||||||| ||||||| || | ||||| |||||| Sbjct 113491 ACCGGCATGAGACCGATAGTCGACAAGTACCGTAAGGGAAAGTTGAAAA 113539 >seq197 Length=2017071 Score = 78.8 bits (86), Expect = 4e-12 Identities = 84/110 (76%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 49 TGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAG 108 |||||| ||||||||| | || ||| |||||| | | ||||| |||||||| ||| | Sbjct 535068 TGTTTGTGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAATACCGGCATG 535009 Query 109 AGACCGATAGCGCACAAGTAGAGTGATCGAAAGATG--AAAAGCACTTTG 156 |||||||||| ||||||| || | ||||| || ||||| |||||| Sbjct 535008 AGACCGATAGTCGACAAGTACCGTAAGGGAAAGTTGAAAAAAGAACTTTG 534959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079510532450