Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= AAMG01000750.1 Length=102 Score E Sequences producing significant alignments: (Bits) Value seq2637 140 1e-31 seq4126 131 8e-29 seq1633 107 9e-22 seq1450 93.3 2e-17 seq438 86.0 3e-15 seq6 78.8 4e-13 >seq2637 Length=283777 Score = 140 bits (154), Expect = 1e-31 Identities = 92/102 (90%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||| Sbjct 210279 GGAAAAAAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAAGAAGGAAGAGCCCAGCG 210338 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 |||||||||||| | | | |||||||||| |||||||||| Sbjct 210339 CCGAATCCCCGCTCGTCTGGCGGGCGCGGGAAATGTGGCGTA 210380 >seq4126 Length=108736 Score = 131 bits (144), Expect = 8e-29 Identities = 90/102 (88%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| Sbjct 95145 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACAGCGAGTGAAGAGGGAAGAGCCCAGCG 95204 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 || ||||||||| | | | ||| ||||| |||||||||| Sbjct 95205 CCAAATCCCCGCTCGTCTGGCAGGCACGGGAAATGTGGCGTA 95246 >seq1633 Length=540360 Score = 107 bits (118), Expect = 9e-22 Identities = 85/102 (83%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||||||||||||| || ||||||| ||||||||| ||||| Sbjct 137357 GGAAAAGAAACTAACCAGGATTCCCTCAGTAATGGTGAGTGAAGAGGGAAGAGTCCAGCA 137298 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 | | ||||| || | | | ||| |||||| ||||||| || Sbjct 137297 CTGGATCCCTGCTCGTCTGGCGGGTGCGGGAAATGTGGCATA 137256 >seq1450 Length=611273 Score = 93.3 bits (102), Expect = 2e-17 Identities = 62/69 (90%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 2 GAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCGC 61 |||||||||| |||||||||||| ||| ||| | | |||||||||||||||||||||||| Sbjct 209109 GAAAAGAAACCAACCAGGATTCCTTCAATAATGACAAGTGAACAGGGAAGAGCCCAGCGC 209050 Query 62 CGAATCCCC 70 |||||||| Sbjct 209049 TGAATCCCC 209041 >seq438 Length=1384813 Score = 86.0 bits (94), Expect = 3e-15 Identities = 80/102 (78%), Gaps = 5/102 (5%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||| |||||||||||||||| | ||||||| ||||| |||||| Sbjct 431795 GGAAAAGAAACTAACTAGGATTCCCTCAGTAATGATGAGTGAAGAGGGA-----CCAGCG 431741 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 | |||| | || | | | |||||| ||| |||||||||| Sbjct 431740 CTGAATTCATGCTCTTCCGGCGGGCGCAGGAAATGTGGCGTA 431699 >seq6 Length=7051617 Score = 78.8 bits (86), Expect = 4e-13 Identities = 62/73 (85%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAAC-CAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGC 59 |||||||||| ||| ||||||||||||||||| | ||||||||||||||||||| || Sbjct 3775422 GGAAAAGAAATTAAAGCAGGATTCCCTCAGTAATGATGAGTGAACAGGGAAGAGCCTGGC 3775481 Query 60 GCCGAATCCCCGC 72 || |||||| || Sbjct 3775482 GCTAAATCCCTGC 3775494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230350710960