Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq1633 215 8e-54 seq1305 203 5e-50 seq1530 188 1e-45 seq398 179 6e-43 seq513 156 7e-36 seq363 145 1e-32 seq497 129 9e-28 seq1498 122 1e-25 seq96 118 2e-24 seq2691 113 7e-23 seq5 105 1e-20 seq311 102 1e-19 seq54 98.7 2e-18 seq370 95.1 2e-17 seq768 91.5 2e-16 seq39 91.5 2e-16 seq144 87.8 3e-15 seq1660 80.6 4e-13 seq1600 80.6 4e-13 seq200 80.6 4e-13 seq997 75.2 2e-11 >seq1633 Length=540360 Score = 215 bits (238), Expect = 8e-54 Identities = 199/246 (81%), Gaps = 6/246 (2%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||||||||| |||| |||| || ||| |||||||||||||||||||||||||| || Sbjct 138477 TCAGTGTAGCGCGTGTGCAGCCCCGA-CATTTAAGGGCATCACAGACCTGTTATTGC-TC 138534 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCA-TAGTC 134 || || | ||||| | || | |||||||||||||| | | ||| | | Sbjct 138535 AATCT-CGTGTGGCTAAACATCACTTGTCCCTCTAAGAAGTTGGATGCTGCCCACTCGGG 138593 Query 135 GATGGGG--CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATC 192 | || | |||||||||| | |||||||||||||||||||||||||||||||||| Sbjct 138594 GTTGCGTAACTATTTAGCATGGAGGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATC 138653 Query 193 ACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAA 252 ||||||||||||||||| |||||||||||||||||| ||| || ||||||||||||||| Sbjct 138654 GCTCCACCAACTAAGAACAGCCATGCACCACCACCCACAGACTCGAGAAAGAGCTATCAA 138713 Query 253 TCTGTC 258 |||||| Sbjct 138714 TCTGTC 138719 >seq1305 Length=658154 Score = 203 bits (224), Expect = 5e-50 Identities = 186/230 (81%), Gaps = 5/230 (2%) Strand=Plus/Minus Query 30 GTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCAT-TGG 88 |||| ||| | |||||||||||||||||||| ||||| |||| |||| || ||| ||| Sbjct 636485 GTGCAGCCTCGGACATCTAAGGGCATCACAGATCTGTTGTTGC-TCAA--TTTCATGTGG 636429 Query 89 CTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGATGGGGCTATTTA 148 || | | || | |||||||||||||| | |||| || | || ||||||| Sbjct 636428 CTAAATGTCACTTGTCCCTCTAAGAAGTTGGAAGCCAATGGGGGTTG-TGAAACTATTTA 636370 Query 149 GCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGA 208 ||| | |||||||||||||||||||||||| ||||||||| ||||||||||||||| Sbjct 636369 GCATGGAGGAGTCTCGTTCGTTATCGGAATTAACTAGACAAATCCCTCCACCAACTAAGA 636310 Query 209 ACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||| ||||||| |||||| ||||||||||||||||||||| Sbjct 636309 ACGGCCATGCACCGCCACCCACAGAATCGAGAAAGAGCTATCAATCTGTC 636260 >seq1530 Length=578587 Score = 188 bits (208), Expect = 1e-45 Identities = 174/216 (81%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 47 TAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCC 106 |||||||||||||||||||||||||| |||| ||| | |||| | | || | ||||| Sbjct 542417 TAAGGGCATCACAGACCTGTTATTGC-TCAATCTTGTGT-GGCTAAACGTCACTTGTCCC 542360 Query 107 TCTAAGAAGCCAGCCACCAACCATAGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTC 163 ||||||||| | | || |||| | | | | |||||||||| | |||| Sbjct 542359 TCTAAGAAGTTGGACGCCGACCACTCGGGGTCGCGTAACTATTTAGCATGGAGGAGTCTT 542300 Query 164 G-TTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCA 222 | || ||||||||||||||||||||||||| |||||||||||||||| ||||||||||| Sbjct 542299 GATTTGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGAATAGCCATGCACCA 542240 Query 223 CCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||| ||||||||||||||||||||| Sbjct 542239 CCACCCATAGAATCGAGAAAGAGCTATCAATCTGTC 542204 >seq398 Length=1469241 Score = 179 bits (198), Expect = 6e-43 Identities = 176/223 (79%), Gaps = 8/223 (4%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||||||||| |||| |||| | ||||||||||||||||||||||||||||||| || Sbjct 552526 TCAGTGTAGCGCGTGTGCAGCCCCGCACATCTAAGGGCATCACAGACCTGTTATTGC-TC 552468 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAA-----GCCAGCCACCAACCAT 130 || || || ||||| | || | ||||||||||||| | | | |||| || Sbjct 552467 AATCT-CCTGTGGCTAACCGTCACTTGTCCCTCTAAGAAAGTTGGTCGCCGACCACTCAG 552409 Query 131 AGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAA 190 ||| | | ||||||||| | ||||| ||| |||||||||||||||||||||| Sbjct 552408 GGTC-ACGTAAGTATTTAGCATGGAGGAGTCTCATTCATTATCGGAATTAACCAGACAAA 552350 Query 191 TCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGA 233 | ||||||||||||||||| |||||||||||||||||| ||| Sbjct 552349 TTGCTCCACCAACTAAGAACAGCCATGCACCACCACCCACAGA 552307 >seq513 Length=1250609 Score = 156 bits (172), Expect = 7e-36 Identities = 162/208 (78%), Gaps = 7/208 (3%) Strand=Plus/Plus Query 55 TCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAA 114 |||| ||||||||||||| |||| || | ||||| | | || |||| |||||||| Sbjct 366126 TCACGGACCTGTTATTGC-TCAATCT-CGTGTGGCTAAATGTCACGTGTCCTTCTAAGAA 366183 Query 115 GC----CAGCCACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTT 170 | || | |||| || ||| | | |||||| || | ||||||||| || Sbjct 366184 GTTGGACATCGACCACTCAGGGTC-ACGTAACTATTTCACATGGAGGAGTCTCGTTCATT 366242 Query 171 ATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCAT 230 || |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| Sbjct 366243 ATTGGAATTAACCAGACAAATCATTCCACCAACGAAGAACGGCCATGCACCACCACCCAC 366302 Query 231 AGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||| ||||||||||||||||||||| Sbjct 366303 AGAATTGAGAAAGAGCTATCAATCTGTC 366330 >seq363 Length=1517062 Score = 145 bits (160), Expect = 1e-32 Identities = 92/100 (92%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 |||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 355125 GTCTTGTTTGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGC 355066 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||| ||||| |||||||||| ||||| |||| Sbjct 355065 ACCACCACCCACAGAATTGAGAAAGAGCTGTCAATTTGTC 355026 >seq497 Length=1262693 Score = 129 bits (142), Expect = 9e-28 Identities = 83/91 (91%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 168 GTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACC 227 ||| | |||||||||||||||||||||||||||||||||||| ||||||| || |||||| Sbjct 430719 GTTTTTGGAATTAACCAGACAAATCACTCCACCAACTAAGAAGGGCCATGTACTACCACC 430778 Query 228 CATAGAATCAAGAAAGAGCTATCAATCTGTC 258 || ||||| ||||||||||||||||||||| Sbjct 430779 CACAGAATAGAGAAAGAGCTATCAATCTGTC 430809 >seq1498 Length=593672 Score = 122 bits (134), Expect = 1e-25 Identities = 87/100 (87%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 |||| |||| |||| |||||||||||||||| | |||||||||||||||| ||| ||| Sbjct 326460 GTCTTGTTCATTATTGGAATTAACCAGACAAGTTGTTCCACCAACTAAGAACAGCCCTGC 326401 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 | ||||||||| | |||||||||| ||||||||||||||| Sbjct 326400 ATCACCACCCACAAAATCAAGAAAAAGCTATCAATCTGTC 326361 >seq96 Length=2569138 Score = 118 bits (130), Expect = 2e-24 Identities = 168/227 (74%), Gaps = 12/227 (5%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||| ||| ||| |||| | ||||||||||||||||| ||||||||||||| || Sbjct 1397581 TCAGTGTCACGCAAGTGTAGCCCTGGACATCTAAGGGCATCACCGACCTGTTATTGC-TC 1397523 Query 76 AAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAA---GCCAGCC-ACCAACCA 129 || || | | |||| |||| || | | ||||||||||| | || | || || Sbjct 1397522 AATCTCACGT-GGCT--AAGCTTCACTTGCCCCTCTAAGAAATTGGATGCTGATCACTCA 1397466 Query 130 TAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT-AACCAGACA 188 ||| | |||||||||| | ||||||||| ||||||||||| ||||||||| Sbjct 1397465 GGGTC-ACATAACTATTTAGCATGGAGGAGTCTCGTTCATTATCGGAATTAAACCAGACA 1397407 Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAAT 235 ||| ||| |||| ||||||| | |||| || |||||||| ||| || Sbjct 1397406 TATCGCTCTACCAGCTAAGAATGACCATACATCACCACCCTTAGTAT 1397360 >seq2691 Length=276685 Score = 113 bits (124), Expect = 7e-23 Identities = 123/159 (77%), Gaps = 6/159 (4%) Strand=Plus/Plus Query 73 CTCAAACTTCCAT-TGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCA-T 130 ||||| || ||| ||||| | | || | ||||||||||||||| | |||| |||| | Sbjct 216669 CTCAATCT--CATGTGGCTAAATGTCACTTGTCCCTCTAAGAAGCTGGACACCGACCACT 216726 Query 131 AGTCG--ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188 | | | | |||||| || | |||||| |||||||| ||||||||||||||| Sbjct 216727 CGGGGTCACGTAACTATTTCGCCTGGAGGGGTCTCATTCGTTATTGGAATTAACCAGACA 216786 Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACC 227 |||| |||||||||||||||||||||||||| | ||||| Sbjct 216787 AATCGCTCCACCAACTAAGAACGGCCATGCATCTCCACC 216825 >seq5 Length=7158969 Score = 105 bits (116), Expect = 1e-20 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 ||||||| |||||| ||||||||||||||||| |||||||| ||||||||| | | || Sbjct 5166422 TTAACCACACAAATTGCTCCACCAACTAAGAACAGCCATGCATCACCACCCACACACACA 5166363 Query 238 AGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||||| Sbjct 5166362 AGAAAGAGCTATCAATCTGTC 5166342 >seq311 Length=1650380 Score = 102 bits (112), Expect = 1e-19 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||| | | |||| || |||| ||||||||||| | ||||| |||| ||| Sbjct 1187004 CTATTTAGCATGGAGAAGTCTTATTTATTATTGGAATTAACCAAAGAAATCGCTCCTCCA 1187063 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGT 257 | ||||||| |||||||||||||||||| ||||| ||||||||||| || || Sbjct 1187064 ATTAAGAACAGCCATGCACCACCACCCACAGAATTGGACAAGAGCTATCAGTCGGT 1187119 >seq54 Length=3135095 Score = 98.7 bits (108), Expect = 2e-18 Identities = 80/97 (82%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 |||| |||| |||| ||| ||||||||||| || ||||| ||||||| | | ||||| Sbjct 1683814 GTCTTGTTCATTATTGGAGTTAACCAGACACATTGCTCCATTGACTAAGAGCTGTCATGC 1683755 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCT 255 ||||||||||| ||||| ||||||||||||||||| Sbjct 1683754 ACCACCACCCACAGAATTGTGAAAGAGCTATCAATCT 1683718 >seq370 Length=1505779 Score = 95.1 bits (104), Expect = 2e-17 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 || || ||| |||| |||||||| ||||||| ||||||||||||| ||| | ||||||| Sbjct 925299 GTTTCATTCCTTATTTGAATTAACTAGACAAACCACTCCACCAACTTAGATCAGCCATGC 925240 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATC 250 ||||||||||| ||| | |||| |||| ||| Sbjct 925239 ACCACCACCCACAGAGTTGAGAACGAGCCATC 925208 >seq768 Length=988699 Score = 91.5 bits (100), Expect = 2e-16 Identities = 109/143 (76%), Gaps = 5/143 (3%) Strand=Plus/Plus Query 66 TTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCA 125 ||||||| |||| || | ||||| | | || | ||||||||||||||| | | || Sbjct 143075 TTATTGC-TCAATCT-CGTGTGGCTAAACGTCACTTGTCCCTCTAAGAAGCTGGACGCCG 143132 Query 126 ACCA-TAGTCGATGGGG--CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAAC 182 |||| | | | || | |||||||||| | ||||||||||||||||||||||| Sbjct 143133 ACCACTCGGGGTTGTGTAACTATTTAGCATGGAGGAGTCTCGTTCGTTATCGGAATTAAT 143192 Query 183 CAGACAAATCACTCCACCAACTA 205 |||||||||| |||||||||||| Sbjct 143193 CAGACAAATCGCTCCACCAACTA 143215 >seq39 Length=3395446 Score = 91.5 bits (100), Expect = 2e-16 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 |||||| |||||||| |||||||||||| | ||| |||||| ||| |||||||||||| Sbjct 2109593 ACCAGAATAATCACTCTGCCAACTAAGAACAGTCATACACCACTACCTATAGAATCAAGA 2109534 Query 241 AAGAGCTATCAATCTGTC 258 || |||||||| |||||| Sbjct 2109533 AAAAGCTATCAGTCTGTC 2109516 >seq144 Length=2304684 Score = 87.8 bits (96), Expect = 3e-15 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 |||||||||||||||||||||||| ||||| |||||||| |||||||| || |||||||| Sbjct 675194 GTCTCGTTCGTTATCGGAATTAACTAGACAGATCACTCCGCCAACTAAAAATGGCCATGC 675135 Query 219 ACC 221 || Sbjct 675134 CCC 675132 >seq1660 Length=528238 Score = 80.6 bits (88), Expect = 4e-13 Identities = 59/69 (86%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||| | | ||||| || |||||||||||||||||||||||| |||||||| Sbjct 397605 CTATTTAGCATGGCAGAGTCTCATTTGTTATCGGAATTAACCAGACAAATTGCTCCACCA 397546 Query 202 ACTAAGAAC 210 | ||||||| Sbjct 397545 ATTAAGAAC 397537 >seq1600 Length=550841 Score = 80.6 bits (88), Expect = 4e-13 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||||| ||| |||| |||| ||||||||||||||||| |||||||| |||| | ||||| Sbjct 173259 GTCTCATTCATTATTGGAAATAACCAGACAAATCACTATACCAACTAGGAACAGTCATGC 173200 Query 219 ACCACCA 225 ||||||| Sbjct 173199 ACCACCA 173193 >seq200 Length=2014620 Score = 80.6 bits (88), Expect = 4e-13 Identities = 68/80 (85%), Gaps = 3/80 (4%) Strand=Plus/Plus Query 142 CTATTTAGCA-GGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC-AAATCACTCCAC 199 ||| |||||| || | || ||| ||||||||||||||||||||| | ||||| |||||| Sbjct 1390553 CTACTTAGCATGGCTGAG-TCTGATTCGTTATCGGAATTAACCAGGCAAAATCGCTCCAC 1390611 Query 200 CAACTAAGAACGGCCATGCA 219 ||||||||||| ||||||| Sbjct 1390612 CAACTAAGAACAACCATGCA 1390631 >seq997 Length=812601 Score = 75.2 bits (82), Expect = 2e-11 Identities = 55/62 (89%), Gaps = 3/62 (5%) Strand=Plus/Plus Query 197 CACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTG 256 ||||||||||||| |||||||| |||||| ||| ||||||||||| |||||| |||||| Sbjct 437187 CACCAACTAAGAATGGCCATGCTCCACCA-CCACAGAATCAAGAA--AGCTATTAATCTG 437243 Query 257 TC 258 || Sbjct 437244 TC 437245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796623860139