Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq4126 102 1e-19 seq1483 98.7 1e-18 seq50 78.8 1e-12 >seq4126 Length=108736 Score = 102 bits (112), Expect = 1e-19 Identities = 144/193 (75%), Gaps = 7/193 (4%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | ||||||||| |||||||| ||| | |||| | ||| Sbjct 92952 AAACCAACAAAATAGAACCGGA-GTCCTATTCCATTATTCCTAGCTGAAGTATCCAAGCG 92894 Query 70 TAAG-CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCACAC 128 | ||||||||||||||||||||||| |||| ||||| | || || | | |||| Sbjct 92893 ACTGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAACGCTTCGGACCCCCAGGACAC 92834 Query 129 -CAATGAAG-GCAT-ACGGGCTCACCAAGAGGTAGG-GCTGGGTAATGCAGTA-CTCGCC 183 || | ||| |||| | ||| | ||||||| ||| |||||| | || ||| ||||| Sbjct 92833 TCAGTTAAGAGCATCAAGGGAGCGACAAGAGGCAGGAGCTGGGACAGGCGGTAGTTCGCC 92774 Query 184 GTGAGGCGGACCA 196 || ||||||||| Sbjct 92773 TTGCGGCGGACCA 92761 Score = 82.4 bits (90), Expect = 9e-14 Identities = 99/128 (77%), Gaps = 5/128 (4%) Strand=Plus/Minus Query 73 GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCACAC-CAA 131 |||||||||||||||||||||||| |||| ||||| | || || | | |||| || Sbjct 49717 GCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAATGCTTCGGACCCCCAGGACACTCAG 49658 Query 132 TGAAG-GCAT-ACGGGCTCACCAAGAGGTA-GGGCTGGGTAATGCAGTA-CTCGCCGTGA 187 | ||| |||| | ||| |||||||||| | |||||||| | |||||| |||||| | Sbjct 49657 TTAAGAGCATCAAGGGAGCACCAAGAGGCAGGGGCTGGGACAGGCAGTAGCTCGCCTCGC 49598 Query 188 GGCGGACC 195 |||||||| Sbjct 49597 GGCGGACC 49590 >seq1483 Length=602516 Score = 98.7 bits (108), Expect = 1e-18 Identities = 144/193 (75%), Gaps = 8/193 (4%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | ||||||||| ||||||||| ||| | |||| | ||| Sbjct 473550 AAACCAACAAAATAGAACCGGA-GTCCTATTCCATTATTCCAAGCTGAAGTATCCAAGCG 473608 Query 70 TAAG-CCTGCTTTGAACACTCTAATTTTCT-CAAGGTAAAAGTCCTGGTTCCTCCGCACA 127 | ||||||||||||||||||||||| | ||| ||||| | || || | | ||| Sbjct 473609 ACCGGCCTGCTTTGAACACTCTAATTTTTTCCAAAGTAAACGCTTCGGACCCCCAGGACA 473668 Query 128 C-CAATGAAG-GCAT-ACGGGCTCACCAAGAGGTA-GGGCTGGGTAATGCAGTA-CTCGC 182 | || | ||| |||| | ||| | |||||||| | |||||||| | || ||| ||||| Sbjct 473669 CTCAGTTAAGAGCATCAAGGGAGCGCCAAGAGGCAGGGGCTGGGACAGGCGGTAGCTCGC 473728 Query 183 CGTGAGGCGGACC 195 | | ||| |||| Sbjct 473729 CTCGCGGCAGACC 473741 >seq50 Length=3219752 Score = 78.8 bits (86), Expect = 1e-12 Identities = 79/100 (79%), Gaps = 2/100 (2%) Strand=Plus/Minus Query 9 GAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGC 68 |||||||||||||||| || | ||||| ||| ||||| || ||| | |||| | | Sbjct 2961363 GAAACCAACAAAATAGAACCGGA-GTCCTCTTCCATTATCCCTAGCTGAAGTATCCAAGT 2961305 Query 69 GTA-AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 | ||||||||||||||||||||||||| |||| ||||| Sbjct 2961304 GACCAGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAA 2961265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595068425646