Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq4126 123 3e-26 seq1483 113 5e-23 seq50 96.9 4e-18 >seq4126 Length=108736 Score = 123 bits (136), Expect = 3e-26 Identities = 134/174 (77%), Gaps = 3/174 (2%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC-TTTGCTCGAATACATTACCATGG 71 ||||||||||||||||||||| |||||||||||||| | ||| | |||| | | | || Sbjct 92855 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCAGTCGCTTGGATACTTCAGCTAGG 92914 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATA 131 |||||| ||||||||| | |||||||||||||| ||||| | ||| | | ||||| Sbjct 92915 AATAATGGAATAGGAC-TCCGGTTCTATTTTGTTGGTTT-TCGGAACTGGGGCCATGATT 92972 Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 || | ||| || |||||| | ||||| | || |||||||||||||||| Sbjct 92973 AAGAGGGACAGCCGGGGGCATTCGTATTGTGCCGCCAGAGGTGAAATTCTTGGA 93026 >seq1483 Length=602516 Score = 113 bits (124), Expect = 5e-23 Identities = 133/175 (76%), Gaps = 4/175 (2%) Strand=Plus/Minus Query 13 TTTACTTTG-AAAAAATTAGAGCGTTCAAAGCAGGCC-TTTGCTCGAATACATTACCATG 70 ||||||||| |||||||||||| |||||||||||||| | ||| | |||| | | | || Sbjct 473648 TTTACTTTGGAAAAAATTAGAGTGTTCAAAGCAGGCCGGTCGCTTGGATACTTCAGCTTG 473589 Query 71 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGAT 130 ||||||| ||||||||| | |||||||||||||| ||||| | ||| | | ||||| Sbjct 473588 GAATAATGGAATAGGAC-TCCGGTTCTATTTTGTTGGTTT-TCGGAACTGGGGCCATGAT 473531 Query 131 AAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 || | ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 473530 TAAGAGGGACGGCCGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 473476 >seq50 Length=3219752 Score = 96.9 bits (106), Expect = 4e-18 Identities = 128/174 (74%), Gaps = 4/174 (2%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATTACCATGG 71 ||||||||||||||||||||| ||||||||||||| | || | |||| | | | || Sbjct 2961265 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTGGTCACTTGGATACTTCAGCTAGG 2961324 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATA 131 ||||| ||| ||||| | |||||||||||||| |||||| ||| | | ||||| Sbjct 2961325 GATAATGGAAGAGGAC-TCCGGTTCTATTTTGTTGGTTTC--GGAACTGGGGCCATGATT 2961381 Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 || | ||| | |||||| | ||||| || | ||||||| |||||||| Sbjct 2961382 AAGAGGGACGGCCGGGGGCATTTGTATTGTGCTGCTAGAGGTGAAGTTCTTGGA 2961435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511886817760