Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq1633 129 1e-27 seq4126 109 1e-21 seq2637 104 4e-20 seq398 89.7 1e-15 >seq1633 Length=540360 Score = 129 bits (142), Expect = 1e-27 Identities = 164/222 (74%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| ||||||||||||||||||||||||| |||| | |||| |||| |||||||| Sbjct 138539 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAAATGT-CGGGGCTGCACACGCGCTAC 138482 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 ||||| | || | || | ||| ||| |||| |||||| | | || | Sbjct 138481 ACTGAATGGATCAGCATGTGTCTACCCTACACCGACAGGTGCGGGTAACCCGTTGAACCC 138422 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAA-TGCCTAGTAA 284 | || || | ||||| | | |||||||||||| | | | ||| ||||| | || | ||| Sbjct 138421 CATTCATGATAGGGATCGGGGATTGCAATTATTTCCCATGAACAAGGAAATTCCCAATAA 138362 Query 285 GCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTG 326 | | | ||||| ||| || |||||||| |||||||||||||| Sbjct 138361 GTGTGGGTCATAAGCTCGTGTTGATTAAGTCCCTGCCCTTTG 138320 >seq4126 Length=108736 Score = 109 bits (120), Expect = 1e-21 Identities = 84/100 (84%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 229 TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC 288 ||||| | ||||| | | |||||||||||| | | | |||||||||| || |||||| || Sbjct 50460 TCGTGATAGGGATCGGGGATTGCAATTATTTCCCGTGAACGAGGAATTCCCAGTAAGTGC 50519 Query 289 GTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | ||||| ||| ||||||||||| |||||||||||||||| Sbjct 50520 GGGTCATAAGCTCGCGTTGATTAAGTCCCTGCCCTTTGTA 50559 >seq2637 Length=283777 Score = 104 bits (114), Expect = 4e-20 Identities = 83/100 (83%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 229 TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC 288 ||||| | ||||| ||| ||| |||||||| | | | |||||||||| || |||||| || Sbjct 208678 TCGTGATAGGGATCGAGGATTACAATTATTTCCCATGAACGAGGAATTCCCAGTAAGTGC 208737 Query 289 GTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | ||||| ||| |||||| |||| |||||||||||||||| Sbjct 208738 GGGTCATAAGCTCGCGTTAATTAAGTCCCTGCCCTTTGTA 208777 >seq398 Length=1469241 Score = 89.7 bits (98), Expect = 1e-15 Identities = 83/101 (82%), Gaps = 7/101 (7%) Strand=Plus/Plus Query 73 TTCTTAGAGGGACTAT---CGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 ||||||||||||| | ||| | |||| ||| | ||||| ||||||||||||||| Sbjct 552430 TTCTTAGAGGGACAAGTGACGGTT--AGCCACAGGA-GATTGAG-CAATAACAGGTCTGT 552485 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 170 ||||||||||||||| | |||| |||| ||||||||||||| Sbjct 552486 GATGCCCTTAGATGTGCGGGGCTGCACACGCGCTACACTGA 552526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946983858432