Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq15843 104 4e-20 seq4126 104 4e-20 seq777 104 4e-20 seq774 100 5e-19 seq17 100 5e-19 seq14 100 5e-19 seq3451 86.0 1e-14 seq3280 86.0 1e-14 seq658 82.4 1e-13 seq401 82.4 1e-13 seq1096 77.0 5e-12 seq8 77.0 5e-12 seq351 73.4 6e-11 >seq15843 Length=2238 Score = 104 bits (114), Expect = 4e-20 Identities = 93/114 (82%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 1051 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 994 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 993 GGTGCGAAGCTACCATCTGTAGGATTATGACTGAACGCCTCTAAGTCAGAATCC 940 >seq4126 Length=108736 Score = 104 bits (114), Expect = 4e-20 Identities = 93/114 (82%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 38961 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGAAGCCAAT 39018 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 39019 GGTGCGAAGCTACCATCTGTAGGATTATGACTGAACGCCTCTAAGTCAGAATCC 39072 >seq777 Length=970644 Score = 104 bits (114), Expect = 4e-20 Identities = 93/114 (82%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 319584 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 319527 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 319526 GGTGCGAAGCTACCATCTGTAGGATTATGACTGAACGCCTCTAAGTCAGAATCC 319473 >seq774 Length=972870 Score = 100 bits (110), Expect = 5e-19 Identities = 92/114 (81%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 366318 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 366261 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||| ||||||||||||||||| Sbjct 366260 GGTGCGAAGCTACCATCTGTAGGATTATGACTGAACACCTCTAAGTCAGAATCC 366207 >seq17 Length=4996841 Score = 100 bits (110), Expect = 5e-19 Identities = 92/114 (81%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||| | | |||||| | ||||| | || | || |||| || || | Sbjct 2805913 GTACGAGAGGAACCACAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 2805970 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 2805971 GGTGCGAAGCTACCATCTGTAGGATTATGACTGAACGCCTCTAAGTCAGAATCC 2806024 >seq14 Length=5160279 Score = 100 bits (110), Expect = 5e-19 Identities = 92/114 (81%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 2283952 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 2284009 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||| | |||||||||||||||||||||||| Sbjct 2284010 GGTGCGAAGCTACCATCTGTAGGATTACGACTGAACGCCTCTAAGTCAGAATCC 2284063 >seq3451 Length=173709 Score = 86.0 bits (94), Expect = 1e-14 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| || | |||||| | ||||| | || | || |||| || || | Sbjct 99364 GTACGAGAGGAACTGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 99421 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | || ||||||||||||| |||||||| |||||| ||||| ||||||||||| Sbjct 99422 GGTGCAAAGCTACCATCTGTAGGATTATGACTGAACACCTCTGAGTCAGAATCC 99475 >seq3280 Length=192154 Score = 86.0 bits (94), Expect = 1e-14 Identities = 91/116 (78%), Gaps = 3/116 (3%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | | | || |||| || || | Sbjct 8494 GTACGAGAGGAACCGCAGG-TTCAGA-TGTTTGGTGTACGTGCTTGGCTGAGGAGCCAAT 8551 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCAT 116 | | ||||| |||||||| |||||||| ||||||||||||||||||||| |||| Sbjct 8552 GGTGTGAAGCCACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAA-CCAT 8606 >seq658 Length=1082839 Score = 82.4 bits (90), Expect = 1e-13 Identities = 88/114 (77%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| |||||||||| | | |||||| | ||||| | || | || |||| || || | Sbjct 612026 GTATGAGAGGAACCACAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 611969 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| ||||| |||||| |||||||||| Sbjct 611968 GGTGCGAAGCTACCATCTGTAGGATTATGAATGAACACCTCTATGTCAGAATCC 611915 >seq401 Length=1460197 Score = 82.4 bits (90), Expect = 1e-13 Identities = 88/114 (77%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||| ||||||||||| | |||| || | ||||| | || | || |||| || || | Sbjct 908591 GTACAAGAGGAACCGCAGG-TTCA-AACATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 908648 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||| ||||||| |||||| |||||| ||||||||||||||||| Sbjct 908649 GGTGCGAAGCTTCCATCTGTAGGATTACAACTGAACACCTCTAAGTCAGAATCC 908702 >seq1096 Length=764492 Score = 77.0 bits (84), Expect = 5e-12 Identities = 74/94 (79%), Gaps = 1/94 (1%) Strand=Plus/Plus Query 21 TTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGC 80 |||||| | ||||| | || | || |||| || || || || ||||||||||||| Sbjct 153481 TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAATGGTGCAAAGCTACCATCTGT 153539 Query 81 TGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 |||||||| ||||||||||| |||||||||||| Sbjct 153540 AGGATTATGACTGAACGCCTCCAAGTCAGAATCC 153573 >seq8 Length=6573876 Score = 77.0 bits (84), Expect = 5e-12 Identities = 89/117 (76%), Gaps = 6/117 (5%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| || | |||||| | ||||| | || | || |||| || || | Sbjct 1487966 GTACGAGAGGAACTGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 1487909 Query 61 GCCGCGAAGCTACC----ATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | |||||||||||| ||||| ||||||| ||| |||||||||||||||||| Sbjct 1487908 GGCGCGAAGCTACCTACCATCTGTAAGATTATGAATGAGCGCCTCTAAGTCAGAATC 1487852 >seq351 Length=1540241 Score = 73.4 bits (80), Expect = 6e-11 Identities = 86/114 (75%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||| | | |||||| | | ||| | | | ||| ||| || || | Sbjct 324169 GTACGAGAGGAACCACAGG-TTCAGAC-ATTGGGTGTAGGTGCCTGGCTGCAGAGCCAAT 324112 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 |||||||||||||||| |||||| |||||||||||||| ||||||||| Sbjct 324111 AGTGCGAAGCTACCATCTGTAGGATTACATCTGAACGCCTCTAACTCAGAATCC 324058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819018908416