Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq889 100 2e-16 seq187 93.3 3e-14 seq470 89.7 4e-13 >seq889 Length=882587 Score = 100 bits (110), Expect = 2e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 66328 TTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCG 66387 ||| ||||| ||| || ||||||||||||||||| || |||||||| || || |||| Sbjct 339289 TTCCACACGCTTCATGAAGAGATCAGGTATCCAGAGTGCATAGAAGAGGTCCCGGGCTCT 339348 Query 66388 TTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCA 66447 |||||||| |||| ||| || || ||| | ||||||||| | || ||||| Sbjct 339349 CTGCTCCTCCTTGCCAGTATTCTTCTTCAGGTCCAAGAACTCAAACACATCAAAGTGCCA 339408 Query 66448 TGGTTCCAGGTAGATGGCGAACG 66470 || |||||||||||||| |||| Sbjct 339409 GGGCTCCAGGTAGATGGCAAACG 339431 >seq187 Length=2081563 Score = 93.3 bits (102), Expect = 3e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 61271 AGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATG 61330 ||||||| || || | || || || |||||||| || |||||||||||| | ||||| Sbjct 729345 AGGAGGTCCAGGTCACTGAAGCTCGCTGTTTCTATGGGTTCCAGATTGCCGTAGAGAACA 729286 Query 61331 TCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 | ||||||||||||||||| | || ||||| || |||||||| || Sbjct 729285 TTCACTCGGAGATGTACAGCCTCCTTATCGACACCTACATCAGAGA 729240 >seq470 Length=1305644 Score = 89.7 bits (98), Expect = 4e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 61041 AGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTA 61100 |||||| || ||||| || || | || || ||| |||| | |||||||||| ||||| Sbjct 590405 AGAGAACCCACGTCGATTTGTCATTTTTCCAATCCAGTACCATGATATTTGGCAGATGTA 590464 Query 61101 CAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 ||||||||| ||||||||||||||||| | || ||||| Sbjct 590465 CAAAAAGGCAGAAGCTTCCTTCTGGACAGCTGAAGAGGT 590503 Score = 86.0 bits (94), Expect = 5e-12 Identities = 90/116 (78%), Gaps = 2/116 (2%) Strand=Plus/Plus Query 61256 TGGAACG-TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAG 61314 |||| || ||| || || || |||||| | | || || || |||||||| || ||||| Sbjct 593426 TGGAGCGATTTAGC-CAAGAAGTGCAAATAACAGAAGCACGCTGTTTCTATGGTTTCCAA 593484 Query 61315 ATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACAT 61370 |||||||||||||| | || || || ||||||||| |||| || ||||| ||||| Sbjct 593485 ATTGCCATGGAGAACATTCATTCAGAAATGTACAGTCTTCTTATTGATACCTACAT 593540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397457433730160