Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lethenteron_20camtschaticum_20[genbank_20GCA_5F000466285.1_202013- 09-13] 86,125 sequences; 1,030,662,718 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq58254 190 3e-46 seq83827 188 1e-45 seq67536 188 1e-45 seq5019 187 4e-45 seq23585 185 1e-44 seq387 185 1e-44 seq72298 179 6e-43 seq462 176 7e-42 seq412 158 2e-36 >seq58254 Length=1291 Score = 190 bits (210), Expect = 3e-46 Identities = 204/258 (79%), Gaps = 9/258 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| |||||||||||||||| |||||| | Sbjct 1028 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACTCGCGCTTACTGGGAATT-C 1085 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | |||| || |||| | ||||| ||||||| |||||| | || Sbjct 1086 CTCGTTCATGGGGAACAGTTCCAATCCCCAATCCCTATCACGAATGGGTTTCAACGGGTT 1145 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT-CAGTGTAGCGCGCGTGC 178 |||| | |||| |||| |||| | || || ||| | ||| ||||||||||||||||| Sbjct 1146 ACCCAG-CCTGCCGGCGAAGGGCGGACACACGCTGA-TCCATTCAGTGTAGCGCGCGTGC 1203 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238 ||||| | |||||||||||||||||||||||||||||| ||||| || |||| || || Sbjct 1204 GGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGG-CTGAA 1261 Query 239 AGGCCATC-TCCCTCGAA 255 || | || |||||| || Sbjct 1262 AGCCACTCGTCCCTCTAA 1279 >seq83827 Length=1020 Score = 188 bits (208), Expect = 1e-45 Identities = 203/258 (79%), Gaps = 8/258 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| |||||||||||||||| |||||| | Sbjct 442 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACTCGCGCTTACTGGGAATT-C 385 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | |||| || |||| | ||||| ||||||| |||||| | || Sbjct 384 CTCGTTCATGGGGAACAGTTCCAATCCCCAATCCCTATCACGAATGGGTTTCAACGGGTT 325 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT-CAGTGTAGCGCGCGTGC 178 |||| |||| |||| |||| | || || ||| | ||| ||||||||||||||||| Sbjct 324 ACCCACGCCTGCCGGCGAAGGGCGGACACACGCTGA-TCCATTCAGTGTAGCGCGCGTGC 266 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238 ||||| | |||||||||||||||||||||||||||||| ||||| || |||| || || Sbjct 265 GGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGG-CTGAA 208 Query 239 AGGCCATC-TCCCTCGAA 255 || | || |||||| || Sbjct 207 AGCCACTCGTCCCTCTAA 190 >seq67536 Length=1177 Score = 188 bits (208), Expect = 1e-45 Identities = 203/258 (79%), Gaps = 8/258 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| |||||||||||||||| |||||| | Sbjct 580 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACTCGCGCTTACTGGGAATT-C 523 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | |||| || |||| | ||||| ||||||| |||||| | || Sbjct 522 CTCGTTCATGGGGAACAGTTCCAATCCCCAATCCCTATCACGAATGGGTTTCAACGGGTT 463 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT-CAGTGTAGCGCGCGTGC 178 |||| |||| |||| |||| | || || ||| | ||| ||||||||||||||||| Sbjct 462 ACCCACGCCTGCCGGCAAAGGGCGGACACACGCTGA-TCCATTCAGTGTAGCGCGCGTGC 404 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238 ||||| | |||||||||||||||||||||||||||||| ||||| || |||| || || Sbjct 403 GGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGG-CTGAA 346 Query 239 AGGCCATC-TCCCTCGAA 255 || | || |||||| || Sbjct 345 AGCCACTCGTCCCTCTAA 328 >seq5019 Length=5553 Score = 187 bits (206), Expect = 4e-45 Identities = 187/235 (80%), Gaps = 6/235 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| |||||||||||||||| |||||| | Sbjct 2465 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACTCGCGCTTACTGGGAATT-C 2408 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | |||| || |||| | ||||| ||||||| |||||| | || Sbjct 2407 CTCGTTCATGGGGAACAGTTCCAATCCCCAATCCCTATCACGAATGGGTTTCAACGGGTT 2348 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT-CAGTGTAGCGCGCGTGC 178 |||| |||| |||| |||| | || || ||| | ||| ||||||||||||||||| Sbjct 2347 ACCCACGCCTGCCGGCGAAGGGCGGACACACGCTGA-TCCATTCAGTGTAGCGCGCGTGC 2289 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 ||||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 2288 GGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGGC 2235 >seq23585 Length=2155 Score = 185 bits (204), Expect = 1e-44 Identities = 202/258 (78%), Gaps = 8/258 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||| ||| || ||||||| ||||| |||||||||||||||| |||||||| Sbjct 1016 GTACAAAGGGCAGTGACTTAATCAACGCAAGCTT-ATGACTCGCGCTTACTGGGAATTTC 958 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 ||||| | | |||| || |||| | ||||| ||||||| |||||| | || Sbjct 957 -TCGTTCATGGGGAACAGTTCCAATCCCCAATCCCTATCACGAATGGGTTTCAACGGGTT 899 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT-CAGTGTAGCGCGCGTGC 178 |||| |||| |||| |||| | || || ||| | ||| ||||||||||||||||| Sbjct 898 ACCCACGCCTGCCGGCGAAGGGCGGACACACGCTGA-TCCATTCAGTGTAGCGCGCGTGC 840 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238 ||||| | |||||||||||||||||||||||||||||| ||||| || |||| || || Sbjct 839 GGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGG-CTGAA 782 Query 239 AGGCCATC-TCCCTCGAA 255 || | || |||||| || Sbjct 781 AGCCACTCGTCCCTCTAA 764 >seq387 Length=463322 Score = 185 bits (204), Expect = 1e-44 Identities = 202/258 (78%), Gaps = 8/258 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| |||||||||||||||| |||||| | Sbjct 420649 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACTCGCGCTTACTGGGAATT-C 420706 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | |||| || |||| | ||||| ||||||| |||||| | || Sbjct 420707 CTCGTTCATGGGGAACAGTTCCAATCCCCAATCCCTATCACGAATGGGTTTCAACGGGTT 420766 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT-CAGTGTAGCGCGCGTGC 178 |||| |||| ||| |||| | || || ||| | ||| ||||||||||||||||| Sbjct 420767 ACCCACGCCTGCCGGTGAAGGGCGGACACACGCTGA-TCCATTCAGTGTAGCGCGCGTGC 420825 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238 ||||| | |||||||||||||||||||||||||||||| ||||| || |||| || || Sbjct 420826 GGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGG-CTGAA 420883 Query 239 AGGCCATC-TCCCTCGAA 255 || | || |||||| || Sbjct 420884 AGCCACTCGTCCCTCTAA 420901 >seq72298 Length=1125 Score = 179 bits (198), Expect = 6e-43 Identities = 201/258 (78%), Gaps = 8/258 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| |||||||||||||||| |||||| | Sbjct 1065 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACTCGCGCTTACTGGGAATT-C 1008 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | |||| || |||| | ||||| ||||||| |||||| | || Sbjct 1007 CTCGTTCATGGGGAACAGTTCCAATCCCCAATCCCTATCACGAATGGGTTTCAACGGGTT 948 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT-CAGTGTAGCGCGCGTGC 178 |||| |||| |||| |||| | || | ||| | ||| ||||||||||||||||| Sbjct 947 ACCCACGCCTGCCGGCGAAGGGCGGACACATGCTGA-TCCATTCAGTGTAGCGCGCGTGC 889 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238 ||||| |||||||||||||||||||||||||||||| ||||| || |||| || || Sbjct 888 GGCCCCAGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGG-CTGAA 831 Query 239 AGGCCATC-TCCCTCGAA 255 || | || |||||| || Sbjct 830 AGCCACTCGTCCCTCTAA 813 >seq462 Length=363519 Score = 176 bits (194), Expect = 7e-42 Identities = 200/258 (78%), Gaps = 8/258 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||| ||||||||||| || ||||||| ||||| ||||||| |||||||| |||||| | Sbjct 330120 GTACATAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACTCACGCTTACTGGGAATT-C 330063 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 ||| || | | |||| || |||| | ||||| ||||||| |||||| | || Sbjct 330062 CTCCTTCATGGGGAACAGTTCCAATCCCCAATCCCTATCACGAATGGGTTTCAACGGGTT 330003 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT-CAGTGTAGCGCGCGTGC 178 |||| |||| |||| |||| | | || | ||| | ||| ||||||||||||||||| Sbjct 330002 ACCCACGCCTGCCGGCGAAGGGCAGACACATGCTGA-TCCATTCAGTGTAGCGCGCGTGC 329944 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238 ||||| ||||||||||||||||||||||||||||||| ||||| || |||| || || Sbjct 329943 GGCCCCGAACATCTAAGGGCATCACAGACCTGTTATT-ACTCAATCTCGTGTGG-CTGAA 329886 Query 239 AGGC-CATCTCCCTCGAA 255 || | | | |||||| || Sbjct 329885 AGCCACTTGTCCCTCTAA 329868 >seq412 Length=414821 Score = 158 bits (174), Expect = 2e-36 Identities = 196/258 (76%), Gaps = 8/258 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| ||||||||||||| || |||||||| Sbjct 312417 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACTCGCGCTTCCTGGGAATTTC 312359 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 | ||| | | |||| || ||| | ||||| ||||||| |||||| | || Sbjct 312358 TT-GTTCATGGGGAACAGTTCTAATCCCCAATCCCTATCACGAATGGGTTTCAACGGGTT 312300 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT-CAGTGTAGCGCGCGTGC 178 |||| |||| | || |||| | || || ||| | ||| || ||||||||| |||| Sbjct 312299 ACCCACGCCTGCCAGCGAAGGGCAGGCACACGCTGA-TCCATTCAATGTAGCGCGGGTGC 312241 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238 |||| | |||||||||||||||||||||||||||||| ||||| || |||| || || Sbjct 312240 AGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGG-CTGAA 312183 Query 239 AGGCCATC-TCCCTCGAA 255 || | || |||||| || Sbjct 312182 AGCCACTCGTCCCTCTAA 312165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751372579375