Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lethenteron_20camtschaticum_20[genbank_20GCA_5F000466285.1_202013- 09-13] 86,125 sequences; 1,030,662,718 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq5019 167 4e-39 seq23585 156 8e-36 seq72298 154 3e-35 seq462 145 1e-32 seq387 138 2e-30 seq412 134 3e-29 >seq5019 Length=5553 Score = 167 bits (184), Expect = 4e-39 Identities = 184/241 (76%), Gaps = 3/241 (1%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT-TGCTCGAATACATTAGCATGG 132 |||||||||| |||||| |||||||||||||||||| ||| ||||| ||| || Sbjct 1573 TTTACTTTGAGAAAATTGGAGTGTTCAAAGCAGGCCGCATGCCTGAATAGTGCAGCTGGG 1632 Query 133 AATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTA 192 |||||| ||||||||| | |||||||||||||||||||| | || | | ||||||| Sbjct 1633 AATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTTTCGGAACGGAGGCCATGATTA 1691 Query 193 ATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTG 252 | ||||| | |||||| | ||||| || ||||||||||||||||||| Sbjct 1692 AGAGGGACTGCCGGGGGCATTCGTATTGTGCCGTTAGAGGTGAAATTCTTGGATCGGCGC 1751 Query 253 AAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 ||||| | | | |||||||| || ||||| |||| ||||||||||| |||||||||| Sbjct 1752 AAGACGAGCGAAAGCGAAAGCATTTGCCAAGAATGTCTTCATTAATCA-AGAACGAAAGT 1810 Query 313 T 313 | Sbjct 1811 T 1811 >seq23585 Length=2155 Score = 156 bits (172), Expect = 8e-36 Identities = 181/240 (75%), Gaps = 3/240 (1%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTT-GCTCGAATACATTAGCATGG 132 |||||||||| |||||| |||||||||||||||||| || ||||| ||| || Sbjct 124 TTTACTTTGAGAAAATTGGAGTGTTCAAAGCAGGCCGCACGCCTGAATAGTGCAGCTGGG 183 Query 133 AATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTA 192 |||||| ||||| ||| | |||||||||||||||||||| | | || | | ||||||| Sbjct 184 AATAATGGAATATGACCT-CGGTTCTATTTTGTTGGTTTTTGGAACGGAGGCCATGATTA 242 Query 193 ATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTG 252 | ||||| | |||||| | ||||| || ||||||||||||||||||| Sbjct 243 AGAGGGACTGCCGGGGGCATTCGTATTGTGCCGTTAGAGGTGAAATTCTTGGATCGGCGC 302 Query 253 AAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 ||||| | | |||||||| || ||||| |||| ||||||||||| |||||||||| Sbjct 303 AAGACGAGTGAAAGCGAAAGCATTTGCCAAGAATGTCTTCATTAATCA-AGAACGAAAGT 361 >seq72298 Length=1125 Score = 154 bits (170), Expect = 3e-35 Identities = 183/243 (75%), Gaps = 9/243 (4%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAAT--ACATT--AGCA 129 |||||||||| |||||| |||||||||||||||||| || || | ||| | ||| Sbjct 173 TTTACTTTGAGAAAATTGGAGTGTTCAAAGCAGGCC---GCACGCCTGAACAGTGCAGCT 229 Query 130 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGA 189 |||||||| ||||||||| | |||||||||||||||||||| | || | | |||| Sbjct 230 GGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTTTCGGAACGGAGGCCATGA 288 Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 249 |||| | ||| | |||||| | ||||| || ||||||||||||||||||| Sbjct 289 TTAAGATGGACTGCCGGGGGCATTCGTATTGTGCCGTTAGAGGTGAAATTCTTGGATCGG 348 Query 250 TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309 ||||| | | | |||||||| || ||||| |||| ||||||||||| ||||||| Sbjct 349 CGCAAGACGAGCGAAAGCGAAAGCATTTGCCAAGAATGTCTTCATTAATCA-AGAACGAA 407 Query 310 AGT 312 ||| Sbjct 408 AGT 410 >seq462 Length=363519 Score = 145 bits (160), Expect = 1e-32 Identities = 180/241 (75%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCC-TTTGCTCGAATACATTAGCATGG 132 |||||||||| |||||| |||||||||||||||||| || || || ||| || Sbjct 329231 TTTACTTTGAGAAAATTGGAGTGTTCAAAGCAGGCCGCACGCCTGATTAGTGCAGCTGGG 329290 Query 133 AATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTA 192 |||||| ||||||||| | ||||| |||||||||||||| | || | | ||||||| Sbjct 329291 AATAATGGAATAGGACCT-CGGTTATATTTTGTTGGTTTTCGGAACGGAGGCCATGATTA 329349 Query 193 ATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTG 252 | ||||| | ||||| || ||||| || ||||||||||||||||||| | Sbjct 329350 AGAGGGACTGCCGGGGCATTC-GTATTGTGCCGTTAGAGGTGAAATTCTTGGATCGGTGC 329408 Query 253 AAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 |||| | | |||||||| || ||||| |||| ||||||||||| |||||||||| Sbjct 329409 AAGATGAGTGAAAGCGAAAGCATTTGCCAAGAATGTCTTCATTAATCA-AGAACGAAAGT 329467 Query 313 T 313 | Sbjct 329468 T 329468 >seq387 Length=463322 Score = 138 bits (152), Expect = 2e-30 Identities = 178/241 (74%), Gaps = 10/241 (4%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCA-GGCCTT-TGCTCGAATACATTAGCATG 131 |||||||||| |||||| |||||||||||||| |||| ||| ||||| || | Sbjct 421536 TTTACTTTGAGAAAATTGGAGTGTTCAAAGCAAGGCCGCATGCCTGAATAGTGCAGGTGG 421477 Query 132 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATT 191 ||||||| ||||||||| | |||||||||||||||||||| | || | | |||||| Sbjct 421476 GAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTTTCGGAACGGAGGCCATGATT 421418 Query 192 AATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATT 251 || ||||| | | |||| | ||||| || |||||||||||| |||||| Sbjct 421417 AAGAGGGACTGCCAGGGGCATTCGTATTGTGCCGTTAGAGGTGAAATTTTTGGATCGGCG 421358 Query 252 GAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAG 311 ||||| | |||||||| || ||||| |||| ||||||||||| ||||||||| Sbjct 421357 CAAGACGA------GCGAAAGCATTTGCCAAGAATGTCTTCATTAATCA-AGAACGAAAG 421305 Query 312 T 312 | Sbjct 421304 T 421304 >seq412 Length=414821 Score = 134 bits (148), Expect = 3e-29 Identities = 174/239 (73%), Gaps = 11/239 (5%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGA 133 |||||||||| |||||| ||||||||||||| || ||||| ||| ||| Sbjct 311535 TTTACTTTGAGAAAATTGGAGTGTTCAAAGC---------CT-GAATAGTGCAGCTGGGA 311584 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 ||||| ||||||||| | | |||||| |||||||||| | || | | |||||||| Sbjct 311585 ATAATGGAATAGGACCTCGGTTTCTATATTGTTGGTTTTCGGAACTGAGGCCATGATTAA 311644 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253 ||||| | |||||| | ||||| || ||||||||||||||||||| | Sbjct 311645 GAGGGACTGCCGGGGGCATTCGTATTGTGCCGTTAGAGGTGAAATTCTTGGATCGGCGCA 311704 Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 |||| | | | |||||||| || ||||| |||| ||||||||||| |||||||||| Sbjct 311705 AGACGAGCGAAAGCGAAAGCATTTGCCAAGAATGTCTTCATTAATCA-AGAACGAAAGT 311762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914411784000