Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lethenteron_20camtschaticum_20[genbank_20GCA_5F000466285.1_202013- 09-13] 86,125 sequences; 1,030,662,718 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq62957 351 2e-94 seq12000 345 7e-93 seq15271 338 1e-90 seq5198 333 5e-89 seq462 329 6e-88 seq663 295 1e-77 seq2775 277 3e-72 seq62663 208 1e-51 seq50514 199 7e-49 seq11873 170 3e-40 seq161 161 2e-37 seq29999 134 2e-29 seq736 73.4 7e-11 >seq62957 Length=1230 Score = 351 bits (388), Expect = 2e-94 Identities = 255/294 (87%), Gaps = 1/294 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGT-CATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | |||| |||||||||||||||||||||||||||| Sbjct 529 TACTGAGCAGGATTACTATTGCGACGACACAGCATCAGTAGGGTAAAACTAACCTGTCTC 588 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 589 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 648 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 649 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 708 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 709 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGCT 768 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | | | ||||||||| ||||| | |||||| ||| |||| || Sbjct 769 TAAAACCCAAAAAGTCAAAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTACTC 822 >seq12000 Length=3188 Score = 345 bits (382), Expect = 7e-93 Identities = 253/293 (86%), Gaps = 1/293 (0%) Strand=Plus/Minus Query 2 ACTAAGCGGAATTACCATTGGGGCGACGGT-CATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||| ||| | ||||| |||| | |||| ||||||||||||||||||||||||||||| Sbjct 3188 ACTGAGCAGGATTACTATTGCGACGACACAGCATCAGTAGGGTAAAACTAACCTGTCTCA 3129 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 3128 CGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTGA 3069 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 3068 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTAT 3009 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| || | Sbjct 3008 GAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGCTT 2949 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||| | | | ||||||||| ||||| | |||||| || |||| || Sbjct 2948 AAAACCCAAAAAGTCAAAAGGATCGTGAGGCCCCGCTTTCACAGTCTGTACTC 2896 >seq15271 Length=2757 Score = 338 bits (374), Expect = 1e-90 Identities = 252/294 (86%), Gaps = 1/294 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGT-CATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | |||| |||||||||||||||||||||||||||| Sbjct 1987 TACTGAGCAGGATTACTATTGCGACGACACAGCATCAGTAGGGTAAAACTAACCTGTCTC 2046 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 2047 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 2106 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| || ||| ||||||||||||||||||||||||||| | ||||||||| Sbjct 2107 AATTCTGCTTCACAATCATAAGAAGAGCCGACATCGAAGGATCAAAAAACGACGTCGCTA 2166 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 2167 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGCT 2226 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | | | ||||||||| ||||| | |||||| ||| |||| || Sbjct 2227 TAAAACCCAAAAAGTCAAAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTACTC 2280 >seq5198 Length=5425 Score = 333 bits (368), Expect = 5e-89 Identities = 251/294 (85%), Gaps = 1/294 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGT-CATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | |||| |||||||||||||||||||||||||||| Sbjct 649 TACTGAGCAGGATTACTATTGCGACGACACAGCATCAGTAGGGTAAAACTAACCTGTCTC 708 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 709 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 768 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||| Sbjct 769 AATTCTGCTTCACAATGATAGGAAGAGCCGACATTGAAGGATCAAAAAGCGACGTCGCTA 828 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 ||||||||| || ||||||||||||||||| ||||||||||||||||| ||||||| || Sbjct 829 TGAACGCTTAGCCGCCACAAGCCAGTTATCTCTGTGGTAACTTTTCTGACACCTCTTGCT 888 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | | | ||||||||| ||||| | |||||| || |||| || Sbjct 889 TAAAACCCAAAAAGTCAAAAGGATCGTGAGGCCCCGCTTTCACGGGCTGTACTC 942 >seq462 Length=363519 Score = 329 bits (364), Expect = 6e-88 Identities = 250/294 (85%), Gaps = 1/294 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGT-CATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | |||| |||||||||||||||||||||||||||| Sbjct 339514 TACTGAGCAGGATTACTATTGCGACGACACAGCATCAGTAGGGTAAAACTAACCTGTCTC 339455 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||||||||||||||||||||||||||||||||||||||||||||| ||| | Sbjct 339454 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAAAACTTGGTG 339395 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 339394 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGTGACGTCGCTA 339335 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||| ||||||||||||||||| ||| ||| || Sbjct 339334 TGAACGCTTGGCCGCCACAAGCCAGTTATCACTGTGGTAACTTTTCTGACACGTCTTGCT 339275 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | | | ||||||||| ||||| | |||||| ||| |||| || Sbjct 339274 TAAAACCCAAAAAGTCAAAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTACTC 339221 >seq663 Length=222059 Score = 295 bits (326), Expect = 1e-77 Identities = 213/245 (87%), Gaps = 1/245 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGT-CATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| ||| | |||| |||||||||||||||| ||||||||||| Sbjct 96107 TACTGAGCAGGATTACTCTTGCGACGACACAGCATCAGTAGGGTAAAAGTAACCTGTCTC 96166 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | | ||||||| ||||||||| ||||||||||||||||||||||||||||||||| | Sbjct 96167 ACAAAGGTCTAACCCCAGCTCAGGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 96226 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| ||||||||||||||||||||||||| || ||||||| |||| |||| Sbjct 96227 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGAATGAAAAAGCGACGTTGCTA 96286 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||| || Sbjct 96287 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAATTTTTCTGACACCTCTTGCT 96346 Query 240 TCAAA 244 ||||| Sbjct 96347 TCAAA 96351 >seq2775 Length=17168 Score = 277 bits (306), Expect = 3e-72 Identities = 190/213 (89%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||| Sbjct 4570 CATCAGTAGGGTAAAACTAACCTGTCTCACAA-GGTCTAAACCTAGCTCACGTTCCCTAT 4512 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 ||||||||||||||||||||||| |||||||||||| |||||||||||||||||| Sbjct 4511 GAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGAC 4452 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 || ||| || ||||||| ||||||||||||||||||||| ||||||||||||||||| | Sbjct 4451 ATTGAAAAATTAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCAC 4392 Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAA 244 | |||||||||||||| || |||| || ||||| Sbjct 4391 TCTGGTAACTTTTCTGACATCTCTTGCTTCAAA 4359 >seq62663 Length=1233 Score = 208 bits (230), Expect = 1e-51 Identities = 152/175 (87%), Gaps = 1/175 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGT-CATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | |||| ||||||||||||| |||||||||||||| Sbjct 177 TACTGAGCAGGATTACAATTGCGACGACACAGCATCAGTAGGGTAGAACTAACCTGTCTC 118 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||| |||||||| |||||||||||||| ||||||||||||||||| | Sbjct 117 ACGACGGTCTAAACTCAGCTCACTTTCCCTATTAGTGGCTGAACAATCCAACGCTTGGTG 58 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGT 174 ||||||||||| |||| ||||||||||||||||||||||||||||||| |||| Sbjct 57 AATTCTGCTTCACAATGAAAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGT 3 >seq50514 Length=1405 Score = 199 bits (220), Expect = 7e-49 Identities = 125/135 (93%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 40 GGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGT 99 ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 136 GGGTAGAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGT 77 Query 100 GAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGG 159 ||||||||||||| || |||||||||||| |||||||||||||||||||||||||| Sbjct 76 GAACAATCCAACGTTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGG 17 Query 160 ATCAAAAAGCAACGT 174 |||||||||| |||| Sbjct 16 ATCAAAAAGCGACGT 2 >seq11873 Length=3205 Score = 170 bits (188), Expect = 3e-40 Identities = 117/131 (89%), Gaps = 1/131 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGT-CATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | |||| |||||||||||||||||||||||||||| Sbjct 144 TACTGAGCAGGATTACTATTGCGACGACACAGCATCAGTAGGGTAAAACTAACCTGTCTC 85 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 84 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 25 Query 120 AATTCTGCTTC 130 ||||||||||| Sbjct 24 AATTCTGCTTC 14 >seq161 Length=1390026 Score = 161 bits (178), Expect = 2e-37 Identities = 122/144 (85%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 35 CAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAG 94 |||| |||| || || ||||||||| ||| ||||||||||||||| ||| | |||||| Sbjct 556430 CAGTGGGGTGAAGCTCACCTGTCTCGCAACGATCTAAACCCAGCTCATGTTTCATATTAG 556371 Query 95 TGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATC 154 ||||||||||||||||||||| ||||||| ||||| |||||||||||||||||| || Sbjct 556370 TGGGTGAACAATCCAACGCTTGGCGAATTCCGCTTCATAATGATAGGAAGAGCCGACGTC 556311 Query 155 GAAGGATCAAAAAGCAACGTCGCT 178 ||| |||||||||| ||||||| Sbjct 556310 GAAAGATCAAAAAGTGGCGTCGCT 556287 >seq29999 Length=1888 Score = 134 bits (148), Expect = 2e-29 Identities = 114/139 (82%), Gaps = 1/139 (1%) Strand=Plus/Minus Query 156 AAGGATCAAAAA-GCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGT 214 |||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1888 AAGGATCAAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGT 1829 Query 215 GGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCAC 274 ||||||||||||| ||||||| || | ||| | | | ||||||||| ||| | | Sbjct 1828 GGTAACTTTTCTGACACCTCTTGCTTAAAACCCAAAAAGTCAAAAGGATCGTGAGGTCCC 1769 Query 275 ACTTTCATGGTTTGTATTC 293 |||||| || |||| || Sbjct 1768 GCTTTCACAGTCTGTACTC 1750 >seq736 Length=186078 Score = 73.4 bits (80), Expect = 7e-11 Identities = 52/60 (87%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 |||||||||||||||| ||||||||||| |||||||| |||||| | ||| | |||||| Sbjct 162430 ATCAGTAGGGTAAAACGAACCTGTCTCACGACGGTCTGAACCCAACCCACCTCGCCTATT 162371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853664148000