Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lethenteron_20camtschaticum_20[genbank_20GCA_5F000466285.1_202013- 09-13] 86,125 sequences; 1,030,662,718 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq72298 93.3 5e-17 seq5019 91.5 2e-16 seq462 91.5 2e-16 seq23585 87.8 2e-15 seq387 77.0 4e-12 >seq72298 Length=1125 Score = 93.3 bits (102), Expect = 5e-17 Identities = 145/196 (74%), Gaps = 11/196 (6%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | ||||||||| |||||||| ||| | ||| |||| Sbjct 270 AAACCAACAAAATAGAACCG-AGGTCCTATTCCATTATTCCCAGCTGCACTGTTCAGGCG 212 Query 70 TAAG-CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCC---GCA 125 | | |||||||||||||||| ||||||||||| ||||| | | | | || || | | Sbjct 211 TGCGGCCTGCTTTGAACACTCCAATTTTCTCAAAGTAAACG-CTTCGGACCCCCACAGGA 153 Query 126 CAC-CAATGAAG-GCATAC-GGGCTCACCAAGAGGT-AGGGCTGGGTAATGCAGT-ACTC 180 ||| ||| ||| |||| | ||| ||||||||||| |||| ||| | ||||| || | Sbjct 152 CACTCAACCAAGAGCATCCGGGGAGCACCAAGAGGTGGGGGCCGGGACAGGCAGTGACAC 93 Query 181 GCCGTGAGGCGGACCA 196 || | ||| ||||| Sbjct 92 ACCTCGCGGCAGACCA 77 >seq5019 Length=5553 Score = 91.5 bits (100), Expect = 2e-16 Identities = 144/195 (74%), Gaps = 11/195 (6%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | ||||||||| |||||||| ||| ||||| ||| Sbjct 1670 AAACCAACAAAATAGAACCG-AGGTCCTATTCCATTATTCCCAGCTGCACTATTCAGGCA 1612 Query 70 TAAG-CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCC---GCA 125 | | |||||||||||||||| ||||||||||| ||||| | | | | || || | | Sbjct 1611 TGCGGCCTGCTTTGAACACTCCAATTTTCTCAAAGTAAACG-CTTCGGACCCCCACAGGA 1553 Query 126 CAC-CAATGAAG-GCATAC-GGGCTCACCAAGAGGT-AGGGCTGGGTAATGCAGT-ACTC 180 ||| ||| ||| |||| | ||| |||| |||||| |||| ||| | ||||| || | Sbjct 1552 CACTCAACCAAGAGCATCCAGGGAGCACCGAGAGGTGGGGGCCGGGACAGGCAGTGACAC 1493 Query 181 GCCGTGAGGCGGACC 195 || | |||||||| Sbjct 1492 ACCTCGTGGCGGACC 1478 >seq462 Length=363519 Score = 91.5 bits (100), Expect = 2e-16 Identities = 144/195 (74%), Gaps = 11/195 (6%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 |||||||||||||| || | ||||||||| |||||||| ||| || || |||| Sbjct 329328 AAACCAACAAAATATAACCG-AGGTCCTATTCCATTATTCCCAGCTGCACTAATCAGGCG 329270 Query 70 TAAG-CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCC---GCA 125 | | |||||||||||||||| ||||||||||| ||||| | | | | || || | | Sbjct 329269 TGCGGCCTGCTTTGAACACTCCAATTTTCTCAAAGTAAACG-CTTCGGACCCCCACAGGA 329211 Query 126 CAC-CAATGAAG-GCATAC-GGGCTCACCAAGAGGT-AGGGCTGGGTAATGCAGT-ACTC 180 ||| ||| ||| |||| | ||| |||| |||||| |||| ||| | ||||| || | Sbjct 329210 CACTCAACCAAGAGCATCCGGGGAGCACCGAGAGGTGGGGGCCGGGACAGGCAGTGACAC 329151 Query 181 GCCGTGAGGCGGACC 195 || || |||||||| Sbjct 329150 ACCTTGCGGCGGACC 329136 >seq23585 Length=2155 Score = 87.8 bits (96), Expect = 2e-15 Identities = 143/195 (73%), Gaps = 11/195 (6%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | ||| ||||| |||||||| ||| ||||| |||| Sbjct 221 AAACCAACAAAATAGAACCG-AGGTCATATTCCATTATTCCCAGCTGCACTATTCAGGCG 163 Query 70 TAAG-CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCC---GCA 125 | | |||||||||||||||| ||||||||||| ||||| | | | | || || | | Sbjct 162 TGCGGCCTGCTTTGAACACTCCAATTTTCTCAAAGTAAACG-CTTCGGACCCCCACAGGA 104 Query 126 CAC-CAATGAAG-GCATAC-GGGCTCACCAAGAGGT-AGGGCTGGGTAATGCAGT-ACTC 180 ||| ||| ||| |||| | ||| |||| |||||| |||| ||| | ||||| || | Sbjct 103 CACTCAACCAAGAGCATCCGGGGAGCACCGAGAGGTGGGGGCCGGGACAGGCAGTGACAC 44 Query 181 GCCGTGAGGCGGACC 195 || | ||||||| Sbjct 43 ACCCCGCAGCGGACC 29 >seq387 Length=463322 Score = 77.0 bits (84), Expect = 4e-12 Identities = 128/175 (73%), Gaps = 9/175 (5%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | ||||||||| |||||||| || ||||| ||| Sbjct 421438 AAACCAACAAAATAGAACCG-AGGTCCTATTCCATTATTCCCACCTGCACTATTCAGGCA 421496 Query 70 TAAGCC--TGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG-TCCTGGTTCCT-CCGCA 125 | | | |||||||||||||| ||||||||||| ||||| | | | | ||| | | | Sbjct 421497 TGCGGCCTTGCTTTGAACACTCCAATTTTCTCAAAGTAAACGCTTCGGACCCCTACAGGA 421556 Query 126 CAC-CAATGAAG-GCATAC-GGGCTCACCAAGAGGT-AGGGCTGGGTAATGCAGT 176 ||| ||| ||| |||| | ||| |||| |||||| |||| ||| | ||||| Sbjct 421557 CACTCAACCAAGAGCATCCGGGGAGCACCGAGAGGTGGGGGCCGGGACAGGCAGT 421611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594703403250