Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lethenteron_20camtschaticum_20[genbank_20GCA_5F000466285.1_202013- 09-13] 86,125 sequences; 1,030,662,718 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq5019 107 2e-21 seq72298 100 3e-19 seq23585 98.7 1e-18 seq462 89.7 5e-16 seq387 87.8 2e-15 >seq5019 Length=5553 Score = 107 bits (118), Expect = 2e-21 Identities = 131/175 (75%), Gaps = 3/175 (2%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC-TTTGCTCGAATACATTACCATGG 71 |||||||||| |||||| ||| |||||||||||||| ||| ||||| | | || Sbjct 1573 TTTACTTTGAGAAAATTGGAGTGTTCAAAGCAGGCCGCATGCCTGAATAGTGCAGCTGGG 1632 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATA 131 |||||| ||||||||| | |||||||||||||| ||||| | ||| || | ||||| Sbjct 1633 AATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTT-TCGGAACGGAGGCCATGATT 1690 Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 || | ||| | |||||| | ||||| || | ||||||||||||||||| Sbjct 1691 AAGAGGGACTGCCGGGGGCATTCGTATTGTGCCGTTAGAGGTGAAATTCTTGGAT 1745 >seq72298 Length=1125 Score = 100 bits (110), Expect = 3e-19 Identities = 132/178 (74%), Gaps = 9/178 (5%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAAT--ACATT--ACCA 68 |||||||||| |||||| ||| |||||||||||||| || || | ||| | | | Sbjct 173 TTTACTTTGAGAAAATTGGAGTGTTCAAAGCAGGCC---GCACGCCTGAACAGTGCAGCT 229 Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATG 128 |||||||| ||||||||| | |||||||||||||| ||||| | ||| || | ||| Sbjct 230 GGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTT-TCGGAACGGAGGCCATG 287 Query 129 ATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 || || | ||| | |||||| | ||||| || | ||||||||||||||||| Sbjct 288 ATTAAGATGGACTGCCGGGGGCATTCGTATTGTGCCGTTAGAGGTGAAATTCTTGGAT 345 >seq23585 Length=2155 Score = 98.7 bits (108), Expect = 1e-18 Identities = 129/175 (74%), Gaps = 3/175 (2%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC-TTTGCTCGAATACATTACCATGG 71 |||||||||| |||||| ||| |||||||||||||| || ||||| | | || Sbjct 124 TTTACTTTGAGAAAATTGGAGTGTTCAAAGCAGGCCGCACGCCTGAATAGTGCAGCTGGG 183 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATA 131 |||||| ||||| ||| | |||||||||||||| ||||| | ||| || | ||||| Sbjct 184 AATAATGGAATATGACCT-CGGTTCTATTTTGTTGGTTT-TTGGAACGGAGGCCATGATT 241 Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 || | ||| | |||||| | ||||| || | ||||||||||||||||| Sbjct 242 AAGAGGGACTGCCGGGGGCATTCGTATTGTGCCGTTAGAGGTGAAATTCTTGGAT 296 >seq462 Length=363519 Score = 89.7 bits (98), Expect = 5e-16 Identities = 128/175 (73%), Gaps = 4/175 (2%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC-TTTGCTCGAATACATTACCATGG 71 |||||||||| |||||| ||| |||||||||||||| || || || | | || Sbjct 329231 TTTACTTTGAGAAAATTGGAGTGTTCAAAGCAGGCCGCACGCCTGATTAGTGCAGCTGGG 329290 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATA 131 |||||| ||||||||| | ||||| |||||||| ||||| | ||| || | ||||| Sbjct 329291 AATAATGGAATAGGACCT-CGGTTATATTTTGTTGGTTT-TCGGAACGGAGGCCATGATT 329348 Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 || | ||| | ||||| || ||||| || | ||||||||||||||||| Sbjct 329349 AAGAGGGACTGCCGGGGCATTC-GTATTGTGCCGTTAGAGGTGAAATTCTTGGAT 329402 >seq387 Length=463322 Score = 87.8 bits (96), Expect = 2e-15 Identities = 128/176 (73%), Gaps = 4/176 (2%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCA-GGCCTT-TGCTCGAATACATTACCATG 70 |||||||||| |||||| ||| |||||||||| |||| ||| ||||| | | Sbjct 421536 TTTACTTTGAGAAAATTGGAGTGTTCAAAGCAAGGCCGCATGCCTGAATAGTGCAGGTGG 421477 Query 71 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGAT 130 ||||||| ||||||||| | |||||||||||||| ||||| | ||| || | ||||| Sbjct 421476 GAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTT-TCGGAACGGAGGCCATGAT 421419 Query 131 AAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 || | ||| | | |||| | ||||| || | |||||||||| |||||| Sbjct 421418 TAAGAGGGACTGCCAGGGGCATTCGTATTGTGCCGTTAGAGGTGAAATTTTTGGAT 421363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511572820000