Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lethenteron_20camtschaticum_20[genbank_20GCA_5F000466285.1_202013- 09-13] 86,125 sequences; 1,030,662,718 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq83827 196 9e-48 seq67536 196 9e-48 seq58254 196 9e-48 seq72298 192 1e-46 seq5019 192 1e-46 seq387 190 4e-46 seq23585 187 5e-45 seq462 178 2e-42 seq412 163 5e-38 seq1655 98.7 2e-18 seq434 84.2 4e-14 >seq83827 Length=1020 Score = 196 bits (216), Expect = 9e-48 Identities = 239/317 (75%), Gaps = 13/317 (4%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGC--CCGCTTTGGCGGGTCGCCG----GCT 73 || |||||| || |||||| |||| | || || || || ||||| || ||| Sbjct 130 GAACGAGACTCCGACGTGCTAACTAGCTACGCGGCCCCTGTGC--GGTCGGCGTTGAGCT 187 Query 74 TCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGAT 132 |||||||||||| | |||| |||| || | ||||| |||||||||||||||||| Sbjct 188 TCTTAGAGGGACGAGTGGCTTTCAGCCACACGA-GATTGAG-CAATAACAGGTCTGTGAT 245 Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT-TCATCAC 191 |||||||||||| | ||||||||||||||||||||||| | || || || || | | Sbjct 246 GCCCTTAGATGTCCGGGGCCGCACGCGCGCTACACTGAATGGATCAGCGTGTGTCCGC-C 304 Query 192 CTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGC 251 ||| ||||| ||| ||||||| | | |||| | ||||| | ||||| | | |||| Sbjct 305 CTTCGCCGGCAGGCGTGGGTAACCCGTTGAAACCCATTCGTGATAGGGATTGGGGATTGG 364 Query 252 AATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTA 311 || | || | | | |||||||||| || |||||||||| ||||| ||| |||||||||| Sbjct 365 AACTGTTCCCCATGAACGAGGAATTCCCAGTAAGCGCGAGTCATAAGCTTGCGTTGATTA 424 Query 312 CGTCCCTGCCCTTTGTA 328 |||||||||||||||| Sbjct 425 AGTCCCTGCCCTTTGTA 441 >seq67536 Length=1177 Score = 196 bits (216), Expect = 9e-48 Identities = 239/317 (75%), Gaps = 13/317 (4%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGC--CCGCTTTGGCGGGTCGCCG----GCT 73 || |||||| || |||||| |||| | || || || || ||||| || ||| Sbjct 268 GAACGAGACTCCGACGTGCTAACTAGCAAAGCGGCCCCTGTGC--GGTCGGCGTTGAGCT 325 Query 74 TCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGAT 132 |||||||||||| | |||| |||| || | ||||| |||||||||||||||||| Sbjct 326 TCTTAGAGGGACGAGTGGCTTTCAGCCACACGA-GATTGAG-CAATAACAGGTCTGTGAT 383 Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT-TCATCAC 191 |||||||||||| | ||||||||||||||||||||||| | || || || || | | Sbjct 384 GCCCTTAGATGTCCGGGGCCGCACGCGCGCTACACTGAATGGATCAGCGTGTGTCCGC-C 442 Query 192 CTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGC 251 ||| ||||| ||| ||||||| | | |||| | ||||| | ||||| | | |||| Sbjct 443 CTTTGCCGGCAGGCGTGGGTAACCCGTTGAAACCCATTCGTGATAGGGATTGGGGATTGG 502 Query 252 AATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTA 311 || | || | | | |||||||||| || |||||||||| ||||| ||| |||||||||| Sbjct 503 AACTGTTCCCCATGAACGAGGAATTCCCAGTAAGCGCGAGTCATAAGCTTGCGTTGATTA 562 Query 312 CGTCCCTGCCCTTTGTA 328 |||||||||||||||| Sbjct 563 AGTCCCTGCCCTTTGTA 579 >seq58254 Length=1291 Score = 196 bits (216), Expect = 9e-48 Identities = 204/260 (78%), Gaps = 6/260 (2%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 ||||||||||||||| | |||| |||| || | ||||| ||||||||||||||| Sbjct 1284 GCTTCTTAGAGGGACGAGTGGCTTTCAGCCACACGA-GATTGAG-CAATAACAGGTCTGT 1227 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT-TCAT 188 ||||||||||||||| | ||||||||||||||||||||||| | || || || || Sbjct 1226 GATGCCCTTAGATGTCCGGGGCCGCACGCGCGCTACACTGAATGGATCAGCGTGTGTCCG 1167 Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248 | |||| ||||| ||| |||||||| | | |||| | ||||| | ||||| | | || Sbjct 1166 C-CCTTCGCCGGCAGG-CTGGGTAACCCGTTGAAACCCATTCGTGATAGGGATTGGGGAT 1109 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 || || | || | | | |||||||||| || |||||||||| ||||| ||| ||||||| Sbjct 1108 TGGAACTGTTCCCCATGAACGAGGAATTCCCAGTAAGCGCGAGTCATAAGCTTGCGTTGA 1049 Query 309 TTACGTCCCTGCCCTTTGTA 328 ||| |||||||||||||||| Sbjct 1048 TTAAGTCCCTGCCCTTTGTA 1029 >seq72298 Length=1125 Score = 192 bits (212), Expect = 1e-46 Identities = 238/317 (75%), Gaps = 13/317 (4%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGC--CCGCTTTGGCGGGTCGCCG----GCT 73 || |||||| | || |||||| |||| | || || || || ||||| || ||| Sbjct 753 GAACGAGACTCTGACGTGCTAACTAGCTATGCTGCCCCTGTGC--GGTCGGCGTTGAGCT 810 Query 74 TCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGAT 132 |||||||||||| | |||| |||| || | ||||| |||||||||||||||||| Sbjct 811 TCTTAGAGGGACGAGTGGCTTTCAGCCACACGA-GATTGAG-CAATAACAGGTCTGTGAT 868 Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT-TCATCAC 191 |||||||||||| ||||||||||||||||||||||| | || | || || | | Sbjct 869 GCCCTTAGATGTCTGGGGCCGCACGCGCGCTACACTGAATGGATCAGCATGTGTCCGC-C 927 Query 192 CTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGC 251 ||| ||||| ||| ||||||| | | |||| | ||||| | ||||| | | |||| Sbjct 928 CTTCGCCGGCAGGCGTGGGTAACCCGTTGAAACCCATTCGTGATAGGGATTGGGGATTGG 987 Query 252 AATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTA 311 || | || | | | |||||||||| || |||||||||| ||||| ||| |||||||||| Sbjct 988 AACTGTTCCCCATGAACGAGGAATTCCCAGTAAGCGCGAGTCATAAGCTTGCGTTGATTA 1047 Query 312 CGTCCCTGCCCTTTGTA 328 |||||||||||||||| Sbjct 1048 AGTCCCTGCCCTTTGTA 1064 >seq5019 Length=5553 Score = 192 bits (212), Expect = 1e-46 Identities = 238/317 (75%), Gaps = 13/317 (4%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGC--CCGCTTTGGCGGGTCGCCG----GCT 73 || |||||| || |||||| |||| | || || || || ||||| || ||| Sbjct 2153 GAACGAGACTCCGACGTGCTAACTAGCTACGCGGCCCCTGTGC--GGTCGGCGTTGAGCT 2210 Query 74 TCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGAT 132 |||||||| ||| | |||| |||| || | ||||| |||||||||||||||||| Sbjct 2211 TCTTAGAGAGACGAGTGGCTTTCAGCCACACGA-GATTGAG-CAATAACAGGTCTGTGAT 2268 Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT-TCATCAC 191 |||||||||||| | ||||||||||||||||||||||| | || || || || | | Sbjct 2269 GCCCTTAGATGTCCGGGGCCGCACGCGCGCTACACTGAATGGATCAGCGTGTGTCCGC-C 2327 Query 192 CTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGC 251 ||| ||||| ||| ||||||| | | |||| | ||||| | ||||| | | |||| Sbjct 2328 CTTCGCCGGCAGGCGTGGGTAACCCGTTGAAACCCATTCGTGATAGGGATTGGGGATTGG 2387 Query 252 AATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTA 311 || | || | | | |||||||||| || |||||||||| ||||| ||| |||||||||| Sbjct 2388 AACTGTTCCCCATGAACGAGGAATTCCCAGTAAGCGCGAGTCATAAGCTTGCGTTGATTA 2447 Query 312 CGTCCCTGCCCTTTGTA 328 |||||||||||||||| Sbjct 2448 AGTCCCTGCCCTTTGTA 2464 >seq387 Length=463322 Score = 190 bits (210), Expect = 4e-46 Identities = 202/260 (78%), Gaps = 5/260 (2%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 ||||||||||||||| | |||| |||| || | ||||| ||||||||||||||| Sbjct 420906 GCTTCTTAGAGGGACGAGTGGCTTTCAGCCACACGA-GATTGAG-CAATAACAGGTCTGT 420849 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT-TCAT 188 ||||||||||||||| | ||||||||||||||||||||||| | || || || || Sbjct 420848 GATGCCCTTAGATGTCCGGGGCCGCACGCGCGCTACACTGAATGGATCAGCGTGTGTCCG 420789 Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248 | |||| |||| ||| ||||||| | | |||| | ||||| | ||||| | | || Sbjct 420788 C-CCTTCACCGGCAGGCGTGGGTAACCCGTTGAAACCCATTCGTGATAGGGATTGGGGAT 420730 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 || || | || | | | |||||||||| || |||||||||| ||||| ||| ||||||| Sbjct 420729 TGGAACTGTTCCCCATGAACGAGGAATTCCCAGTAAGCGCGAGTCATAAGCTTGCGTTGA 420670 Query 309 TTACGTCCCTGCCCTTTGTA 328 ||| |||||||||||||||| Sbjct 420669 TTAAGTCCCTGCCCTTTGTA 420650 >seq23585 Length=2155 Score = 187 bits (206), Expect = 5e-45 Identities = 237/317 (75%), Gaps = 13/317 (4%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGC--CCGCTTTGGCGGGTCGCCG----GCT 73 || |||||| || |||||| |||| | || || || || ||||| || ||| Sbjct 704 GAACGAGACTCCGACGTGCTAACTAGCTACGCGGCCCCTGTGC--GGTCGGCGTTGAGCT 761 Query 74 TCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGAT 132 |||||||||||| | |||| |||| || | ||||| |||||||||||||||||| Sbjct 762 TCTTAGAGGGACGAGTGGCTTTCAGCCACACGA-GATTGAG-CAATAACAGGTCTGTGAT 819 Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT-TCATCAC 191 |||||||||||| | ||||||||||||||||||||||| | || || || || | | Sbjct 820 GCCCTTAGATGTCCGGGGCCGCACGCGCGCTACACTGAATGGATCAGCGTGTGTCCGC-C 878 Query 192 CTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGC 251 ||| ||||| ||| ||||||| | | |||| | ||||| | ||||| | | |||| Sbjct 879 CTTCGCCGGCAGGCGTGGGTAACCCGTTGAAACCCATTCGTGATAGGGATTGGGGATTGG 938 Query 252 AATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTA 311 || | || | | | |||||| ||| || |||||||||| ||||| ||| |||||||||| Sbjct 939 AACTGTTCCCCATGAACGAGAAATTCCCAGTAAGCGCGAGTCATAAGCTTGCGTTGATTA 998 Query 312 CGTCCCTGCCCTTTGTA 328 ||| |||||||||||| Sbjct 999 AGTCACTGCCCTTTGTA 1015 >seq462 Length=363519 Score = 178 bits (196), Expect = 2e-42 Identities = 197/259 (76%), Gaps = 3/259 (1%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 ||||||||||||||| | |||| |||| || | ||||| |||||||||||||| Sbjct 329863 GCTTCTTAGAGGGACAAGTGGCTTTCAGCCACACGA-GATTGAGT-AATAACAGGTCTGT 329920 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 ||||||||||||||||| ||||||||||||||||||||||| | || | || | Sbjct 329921 GATGCCCTTAGATGTTCGGGGCCGCACGCGCGCTACACTGAATGGATCAGCATGTGTCTG 329980 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 |||| ||||| ||| ||||||| | | |||| | ||||| | ||||| | | ||| Sbjct 329981 CCCTTCGCCGGCAGGCGTGGGTAACCCGTTGAAACCCATTCGTGATAGGGATTGGGGATT 330040 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 | || | || | | | || ||||||| || |||||||| | ||||| ||| |||||||| Sbjct 330041 GGAACTGTTCCCCATGAAGGAGGAATTCCCAGTAAGCGTGAGTCATAAGCTTGCGTTGAT 330100 Query 310 TACGTCCCTGCCCTTTGTA 328 || ||||||||||| |||| Sbjct 330101 TAAGTCCCTGCCCTATGTA 330119 >seq412 Length=414821 Score = 163 bits (180), Expect = 5e-38 Identities = 194/259 (75%), Gaps = 3/259 (1%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 ||||||||||||||| | |||| |||| || | ||||| ||||||||||||||| Sbjct 312160 GCTTCTTAGAGGGACGAGTGGCTTTCAGCCACACGA-GATTGAG-CAATAACAGGTCTGT 312217 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 ||||||||||||||| | |||| |||| ||||||||| ||| | || || || | | Sbjct 312218 GATGCCCTTAGATGTCCGGGGCTGCACCCGCGCTACATTGAATGGATCAGCGTGTGCCTG 312277 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 |||| || || ||| ||||||| | | |||| | ||||| | ||||| | | ||| Sbjct 312278 CCCTTCGCTGGCAGGCGTGGGTAACCCGTTGAAACCCATTCGTGATAGGGATTGGGGATT 312337 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 || | || | | | ||| || ||| || || ||||||| ||||| ||| |||||||| Sbjct 312338 AGAACTGTTCCCCATGAACAAGAAATTCCCAGGAAGCGCGAGTCATAAGCTTGCGTTGAT 312397 Query 310 TACGTCCCTGCCCTTTGTA 328 || |||||||||||||||| Sbjct 312398 TAAGTCCCTGCCCTTTGTA 312416 >seq1655 Length=46217 Score = 98.7 bits (108), Expect = 2e-18 Identities = 182/258 (71%), Gaps = 7/258 (3%) Strand=Plus/Plus Query 70 GGCTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 ||||||||||||||| | ||||| |||| | || | ||||| |||||||||||||| Sbjct 44902 GGCTTCTTAGAGGGATGAGTGGCTCTCAGCCAAACGA-GATTGAG-CAATAACAGGTCTG 44959 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188 |||| | ||||||||| | ||| ||||| ||| ||||||| | | | |||| | Sbjct 44960 TGATACACTTAGATGTACGGGGTCGCACACGCACTACACT-AAATTGATCACGACATGTC 45018 Query 189 CA-CCTTGGCCGGAAGG-TCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGC 246 || |||| | ||| || ||||| | | | |||||| | | | ||||| ||| Sbjct 45019 CACCCTTCGGCGGCGGGCATTGGGTTCCCAT-TGAAACTCATTTGCAATAGGGATTGAGA 45077 Query 247 ATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTT 306 |||| || || | | | ||| ||| || ||||||| | ||||| ||| ||||| Sbjct 45078 ATTGGAACCGTTCCCCGTGAACACAAAATTCCCAGTAAGCACCAGTCATGAGCTTGCGTT 45137 Query 307 GATTACGTCCCTGCCCTT 324 ||||| |||| ||||||| Sbjct 45138 GATTAAGTCCATGCCCTT 45155 >seq434 Length=391052 Score = 84.2 bits (92), Expect = 4e-14 Identities = 81/100 (81%), Gaps = 3/100 (3%) Strand=Plus/Plus Query 70 GGCTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 ||||||||||||||| | ||||| |||| | || | ||||| || ||||||||||| Sbjct 246364 GGCTTCTTAGAGGGATGAGTGGCTCTCAGCCAAACGA-GATTGAG-CAGTAACAGGTCTG 246421 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACT 168 |||| | ||||||||| | | | ||||||||||||||||| Sbjct 246422 TGATACACTTAGATGTACGGCGTCGCACGCGCGCTACACT 246461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946384224000