Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lethenteron_20camtschaticum_20[genbank_20GCA_5F000466285.1_202013- 09-13] 86,125 sequences; 1,030,662,718 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq11873 91.5 2e-16 seq5198 91.5 2e-16 seq62957 86.0 1e-14 seq462 86.0 1e-14 seq164 78.8 2e-12 seq15271 77.0 5e-12 >seq11873 Length=3205 Score = 91.5 bits (100), Expect = 2e-16 Identities = 90/114 (79%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | |||| |||| || ||||| || || Sbjct 142 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGCGCGTGCGCTTGGCTGACGAGCCAAC 199 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||| ||||||||||| |||||||| ||||||||||||||||| |||||| Sbjct 200 GGTGCGACGCTACCATCTGAGGGATTATGACTGAACGCCTCTAAGTCCGAATCC 253 >seq5198 Length=5425 Score = 91.5 bits (100), Expect = 2e-16 Identities = 90/114 (79%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||| || | |||| |||| || ||||| || || Sbjct 651 GTACGAGAGGAACCGCAGG-TTCA-AACATTTGGCGCGTGCGCTTGGCTGACGAGCCAAC 594 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||| ||||||||||| |||||||| ||||||||||||||||| |||||| Sbjct 593 GGTGCGACGCTACCATCTGAGGGATTATGACTGAACGCCTCTAAGTCCGAATCC 540 >seq62957 Length=1230 Score = 86.0 bits (94), Expect = 1e-14 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | |||| |||| || |||| || || Sbjct 531 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGCGCGTGCGCTTGGCTGAGGAGCCAAC 474 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||| ||||||||||| |||||||| ||||||||||||||||| |||||| Sbjct 473 GGTGCGACGCTACCATCTGAGGGATTATGACTGAACGCCTCTAAGTCCGAATCC 420 >seq462 Length=363519 Score = 86.0 bits (94), Expect = 1e-14 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | |||| |||| || ||||| || || Sbjct 339512 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGCGCGTGCGCTTGGCTGACGAGCCAAC 339569 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||| | ||||||||| |||||||| ||||||||||||||||| |||||| Sbjct 339570 GGTGCGACGTTACCATCTGAGGGATTATGACTGAACGCCTCTAAGTCCGAATCC 339623 >seq164 Length=1333516 Score = 78.8 bits (86), Expect = 2e-12 Identities = 94/125 (75%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||| ||| | |||||| | |||| |||| || |||| || || Sbjct 148426 GTACGAGAGGAATCGCAGG-TTCAGAC-ATTTGGCGCGTGCGCTTGGCTGAGGAGCCAAC 148369 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||| ||||||||| | |||||||| ||||||||||||||||| ||||| | ||| Sbjct 148368 GGTGCGACGCTACCATCCGAGGGATTATGACTGAACGCCTCTAAGTCCGAATCAACCCCA 148309 Query 121 GAACG 125 |||| Sbjct 148308 AAACG 148304 >seq15271 Length=2757 Score = 77.0 bits (84), Expect = 5e-12 Identities = 87/114 (76%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| |||||||||||| | |||||| | |||| |||| || |||| || || Sbjct 1989 GTAGGAGAGGAACCGCAGG-TTCAGAC-ATTTGGCGCGTGCGCTTGGCTGAGGAGCCAAC 1932 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | | || ||||||||||| |||||||| ||||||||||||||||| |||||| Sbjct 1931 GGTGTGACGCTACCATCTGAGGGATTATGACTGAACGCCTCTAAGTCCGAATCC 1878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 818516512000