Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lethenteron_20camtschaticum_20[genbank_20GCA_5F000466285.1_202013- 09-13] 86,125 sequences; 1,030,662,718 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq387 437 3e-120 seq462 432 1e-118 seq2365 405 2e-110 seq35704 176 1e-41 seq5019 167 7e-39 >seq387 Length=463322 Score = 437 bits (484), Expect = 3e-120 Identities = 418/521 (80%), Gaps = 22/521 (4%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 |||||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||| Sbjct 421767 GTACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACC 421826 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct 421827 TCCCCGAGTCGGGAGTGAGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 421886 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||| ||||||||||||||||||||||| |||| ||||||||||| | |||||||| Sbjct 421887 TTCTCAGACTCCCTCTCCGGAATCGAACCCTGATTCTCCGTTACCCGTGGTCACCATGGT 421946 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||| | ||| ||||| ||||||||| |||||| ||| ||| || | ||||| || Sbjct 421947 AGGCACGGAGCCTGCCATCATAAGTTGATAAGGCAGACATTCGAAAGATACGTCGCCAGC 422006 Query 240 -TCAAGGCCATGCGATTCGTTAA----GTTATTATGAATCACCAAGGAGCCCCG--AAGG 292 || |||| || ||| | | ||||| || ||||||| | | | | ||| Sbjct 422007 ACCAGGGCCGTGTGATCTGCCCACGTGGTTATCCAGAGTCACCAAAGCGTCTGGGCAAGC 422066 Query 293 GCG--TTGGTTTTTTATCTAATAAATACACCCCTTCC--GAAGTC-GGGGTTTTTAGCAT 347 || |||| |||| ||||||||| | ||| | | || || ||| | | | | ||||| Sbjct 422067 CCGGATTGG-TTTTGATCTAATAAGTGCACGCATCCCCGGAGGTCAGCGCTCGTCAGCAT 422125 Query 348 GTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGT---ACTATCAAATAAACG 404 |||||||||||||||||||||| |||||||| | | | ||| | |||||| ||| Sbjct 422126 GTATTAGCTCTAGAATTACCACAGTTATCCAAGCA--ACGGTCGAGCGATCAAAGGAACC 422183 Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGAT-TGCTTATACTTAGACAT 463 ||||||||||||||||||||||||||||||||||||| | || || || || |||||| Sbjct 422184 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA-ACATATGTTTGCACGCAGACAT 422242 Query 464 GCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||| |||||||||| Sbjct 422243 GCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 422282 >seq462 Length=363519 Score = 432 bits (478), Expect = 1e-118 Identities = 417/521 (80%), Gaps = 22/521 (4%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||| |||||||| | || | |||||| |||| || ||||| | ||||||||| Sbjct 328999 GTACTCATTTCAATTACAGGGCCTCGAAAGAGTCCTGCATTGTTATTTTTCGTCACTACC 328940 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 328939 TCCCCGAGTTGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 328880 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||| Sbjct 328879 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTGGTCACCATGGT 328820 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||| | ||| |||||| |||||||||||| ||| ||| ||| || | ||||| || Sbjct 328819 AGGCACGGAGCCTGCCATCGTAAGTTGATAGGGTAGACATTCGAAAGATACGTCGCCAGC 328760 Query 240 -TCAAGGCCATGCGATTCGTTAA----GTTATTATGAATCACCAAGGAGCCCCG--AAGG 292 || |||| ||||||| | | ||||| || ||||||| | | || | ||| Sbjct 328759 ACCAGGGCCGTGCGATTTGCCCACATGGTTATCCAGAGTCACCAAAGCGTCCGGGCAAGC 328700 Query 293 GCG--TTGGTTTTTTATCTAATAAATACACCCCTTCC--GAAGTC-GGGGTTTTTAGCAT 347 || |||| |||| |||||||| | ||| | | || || ||| | | | | ||||| Sbjct 328699 CCGGATTGG-TTTTGGTCTAATAAGTGCACGCATCCCCGGAGGTCAGCGCTCGTCAGCAT 328641 Query 348 GTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGT---ACTATCAAATAAACG 404 ||||||||||||||||||| || |||||| | | | | ||| | |||||| ||| Sbjct 328640 GTATTAGCTCTAGAATTACTACAGTTATCAAAGCA--ACGGTCGAGCGATCAAAGGAACC 328583 Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGAT-TGCTTATACTTAGACAT 463 ||||||||||||||||||||| ||||||||||||||| | || | || || |||||| Sbjct 328582 ATAACTGATTTAATGAGCCATACGCAGTTTCACTGTA-ACATCCGTTTGCACGCAGACAT 328524 Query 464 GCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||| |||||||||| Sbjct 328523 GCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 328484 >seq2365 Length=23418 Score = 405 bits (448), Expect = 2e-110 Identities = 410/521 (79%), Gaps = 32/521 (6%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 |||||||||||||||||| | || | |||||| ||||||| ||||| | |||| |||| Sbjct 17852 GTACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCATTACC 17911 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||| |||| || ||||||||||||||||||||||||||||||||||||||||||| | Sbjct 17912 TCCCCGAGTCGAGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCAT 17971 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||||||||||||||||||||||||| ||||||||| |||||||| Sbjct 17972 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGT----------CACCATGGT 18021 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||| | ||| ||||| |||||||||||||||| ||| ||| || | ||||| || Sbjct 18022 AGGCACAGAGCCTGCCATCATAAGTTGATAGGGCAGACATTCGAAAGATACGTCGCCAGC 18081 Query 240 TCAAGG-CCATGCGATTCGTTAA----GTTATTATGAATCACCAAGGAGCCCCG--AAGG 292 | ||| || |||||| | | ||||| || ||||||| | | || | ||| Sbjct 18082 ACCAGGACCGTGCGATCTGCCCACGTGGTTATCCAGAGTCACCAAAGCGTCCGGGCAAGC 18141 Query 293 GCG--TTGGTTTTTTATCTAATAAATACACCCCTTCC--GAAGTC-GGGGTTTTTAGCAT 347 || |||| |||| |||||||| | ||| | | || || ||| | | | | ||||| Sbjct 18142 CCGAATTGG-TTTTGGTCTAATAAGTGCACGCATCCCCGGAGGTCAGCGCTCGTCAGCAT 18200 Query 348 GTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGT---ACTATCAAATAAACG 404 |||||||||||||||||||||| |||||||| | | | ||| | |||||| ||| Sbjct 18201 GTATTAGCTCTAGAATTACCACAGTTATCCAAGCA--ACGGTCGAGCGATCAAAGGAACC 18258 Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGAT-TGCTTATACTTAGACAT 463 ||||||||||||||||||||||||||||||||||||| | || | || || |||||| Sbjct 18259 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA-ACATCCGTTTGCACGCAGACAT 18317 Query 464 GCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||| ||||||||||||||||||||||| |||||||||| Sbjct 18318 GCATGGTTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 18357 >seq35704 Length=1717 Score = 176 bits (194), Expect = 1e-41 Identities = 174/216 (81%), Gaps = 12/216 (6%) Strand=Plus/Plus Query 296 TTGGTTTTTTATCTAATAAATACACCCCTTCC--GAAGTCGGGGTTTTT-AGCATGTATT 352 |||||||| |||||||| | ||| | | || || ||| | | | | |||||||||| Sbjct 44 TTGGTTTTGG-TCTAATAAGTGCACGCATCCCCGGAGGTCAGCGCTCGTCAGCATGTATT 102 Query 353 AGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTA---CTATCAAATAAACGATAAC 409 ||||||||||||||||| |||||||| | | | ||| | |||||| ||| ||||| Sbjct 103 AGCTCTAGAATTACCACAGTTATCCAAGCA--ACGGTCGAGCAATCAAAGGAACCATAAC 160 Query 410 TGATTTAATGAGCCATTCGCAGTTTCACTGTATAGAT-TGCTTATACTTAGACATGCATG 468 |||||||||||||||||||||||||||||||| | || | || || ||||||||||| Sbjct 161 TGATTTAATGAGCCATTCGCAGTTTCACTGTA-ACATCCGTTTGCACGCAGACATGCATG 219 Query 469 GCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||| ||||||||||||| |||||||||| Sbjct 220 GCTTAATCTTTTAGACAAGCATATG-CTACTGGCAG 254 >seq5019 Length=5553 Score = 167 bits (184), Expect = 7e-39 Identities = 140/166 (84%), Gaps = 8/166 (5%) Strand=Plus/Minus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTA---CTATCAAAT 399 || |||||||||||||||||||| ||| |||||||| | | | ||| | |||||| Sbjct 1311 AGTATGTATTAGCTCTAGAATTAACACAGTTATCCAAGCA--ACGGTCGAGCGATCAAAG 1254 Query 400 AAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGAT-TGCTTATACTTA 458 ||| ||||||||||||||||||||||||||||||||||||| | || | || || | Sbjct 1253 GAACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA-ACATCCGTTTGCACGCA 1195 Query 459 GACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1194 GACATGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 1150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509099168000