Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leucoraja_20erinacea_20[genbank_20GCA_5F000238235.1_202011-12-15] 2,962,366 sequences; 1,555,461,038 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq636314 181 2e-43 seq1681212 75.2 2e-11 >seq636314 Length=4851 Score = 181 bits (200), Expect = 2e-43 Identities = 186/235 (79%), Gaps = 6/235 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||||||||| ||||| | | |||||| |||||| | Sbjct 1328 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCACACTTACTGGGAATT-C 1385 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | ||||| ||||||| ||||| | || Sbjct 1386 CTCGTTCACGGGAAATAATTGCAATTCCCGATCCCAATCACGAATGGGGTTCAACGGGTT 1445 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT-CAGTGTAGCGCGCGTGC 178 ||||| ||||| |||| ||| | | || || ||| | ||| ||||||||||||||||| Sbjct 1446 ACCCGCACCTGGCGGCGTAGGGTAGACACACGCTGA-TCCATTCAGTGTAGCGCGCGTGC 1504 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 1505 AGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGGC 1558 >seq1681212 Length=615 Score = 75.2 bits (82), Expect = 2e-11 Identities = 60/71 (85%), Gaps = 1/71 (1%) Strand=Plus/Minus Query 163 AGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 ||||||||| ||||| |||| | |||||||||| ||||||||||||||||||| ||||| Sbjct 480 AGTGTAGCGTTCGTGCAGCCCCGGACATCTAAGGTCATCACAGACCTGTTATTG-CTCAA 422 Query 223 ACTTCCGTGGC 233 || ||||| Sbjct 421 TCTCATGTGGC 411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 730419163690