Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leucoraja_20erinacea_20[genbank_20GCA_5F000238235.1_202011-12-15] 2,962,366 sequences; 1,555,461,038 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq636314 104 1e-20 seq1107347 84.2 1e-14 >seq636314 Length=4851 Score = 104 bits (114), Expect = 1e-20 Identities = 93/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || ||| | | ||| |||| ||||| |||| Sbjct 1859 GAACCCAAAGACTTTGGTTTCCCGGAAGCTCCTCGGCGGGTCATGGGAATAACGCCGCCG 1918 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| ||||||||||| ||||| ||| ||||||||||||||||||||||||||| Sbjct 1919 GATCGCTAGTCGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 1975 >seq1107347 Length=233 Score = 84.2 bits (92), Expect = 1e-14 Identities = 89/117 (76%), Gaps = 3/117 (3%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||| |||| |||| || ||| | | |||| |||| || || | |||| Sbjct 91 GAACCCAAAGATTTTGGTTTCCCGGAAGCTCCTCAGCGGGTCA---TGGGAATAACGCCG 147 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| || |||||| | |||| ||| |||||||||||||||||| |||||||| Sbjct 148 GATCTCTGGTCGGCTTCATTTATGGTCCGAACTACGACGGTATCTGATTGTCTTCGA 204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 270668224740