Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leucoraja_20erinacea_20[genbank_20GCA_5F000238235.1_202011-12-15] 2,962,366 sequences; 1,555,461,038 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq1476238 154 6e-35 seq2191663 118 4e-24 seq304388 98.7 4e-18 seq2131170 77.0 1e-11 >seq1476238 Length=3789 Score = 154 bits (170), Expect = 6e-35 Identities = 115/135 (85%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | |||| || || | |||||||||||||||||||||||||| | |||| |||| Sbjct 2189 GAGCAGGAGCGTACGTGCTAGGACCCGAAAGATGGTGAACTATGCCCGGGCAGGGCGAAG 2248 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 ||||||||||||||||||||||| ||||||||| ||| ||||||||||| ||||| | Sbjct 2249 CCAGAGGAAACTCTGGTGGAGGCCCGCAGCGGTCCTGACGTGCAAATCGGTCGTCTGACC 2308 Query 669 TGGGTATAGGGGCGA 683 ||||||||||||||| Sbjct 2309 TGGGTATAGGGGCGA 2323 Score = 123 bits (136), Expect = 1e-25 Identities = 113/143 (79%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| ||||||||| | || |||| |||||| | | ||||| ||||||| Sbjct 1376 GAGTCGGGTTGCTTGTGAATGCAGCCCAAAGTGGGTGGTAAACTCCATCTAAGGCTAAAT 1435 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | |||| ||||||||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 1436 ACTGGCACGAGACCGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 1495 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || ||||||| Sbjct 1496 AGAGAGTTCAAGAGGGCGTGAAA 1518 >seq2191663 Length=210 Score = 118 bits (130), Expect = 4e-24 Identities = 91/108 (84%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 572 CCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGC 631 ||||||||||||||||||||||| | | |||| |||| ||||||||||||||||||||| Sbjct 73 CCCGAAAGATGGTGAACTATGCCCGGACAGGGCGAAGTGAGAGGAAACTCTGGTGGAGGC 132 Query 632 TCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGG 679 ||||||| | ||| ||||||||||| || || | ||||||| ||| Sbjct 133 CCGCAGCGATCCTGACGTGCAAATCGGTCATCTGACCTGGGTATTGGG 180 >seq304388 Length=385 Score = 98.7 bits (108), Expect = 4e-18 Identities = 77/91 (85%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 ||||||||||||| ||||||||||||||| |||| ||||| ||||||| ||||||||| Sbjct 295 GGACCCGAAAGATAGTGAACTATGCCTGAGCAGGGCAAAGCCGGAGGAAATTCTGGTGGA 354 Query 629 GG--CTCGCAGCGGTTCTGGCGTGCAAATCG 657 || | | ||||||| ||| | ||||||||| Sbjct 355 GGCCCACACAGCGGTACTGACATGCAAATCG 385 >seq2131170 Length=283 Score = 77.0 bits (84), Expect = 1e-11 Identities = 85/114 (75%), Gaps = 11/114 (10%) Strand=Plus/Minus Query 570 GACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAG 629 ||| ||||||||||||||||| || | ||| ||||||||||||| |||||||||| Sbjct 219 GACTCGAAAGATGGTGAACTACGCTCGGGCAGGTCGAAGCCAGAGGAACCTCTGGTGGA- 161 Query 630 GCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | |||| ||||||||||| ||||| | |||||||||| |||| Sbjct 160 -----AATCGGT-----CGTGCAAATCGGTCGTCTGACCTGGGTATAGGTGCGA 117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2016457249300