Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leucoraja_20erinacea_20[genbank_20GCA_5F000238235.1_202011-12-15] 2,962,366 sequences; 1,555,461,038 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq636314 257 3e-66 seq415028 170 3e-40 seq2039351 167 4e-39 seq990678 167 4e-39 seq1980180 149 1e-33 seq2921322 147 3e-33 seq1862775 143 4e-32 seq1529994 141 1e-31 seq128206 120 5e-25 seq43850 114 2e-23 seq448526 109 8e-22 seq1603238 107 3e-21 seq2609313 84.2 3e-14 seq1681212 84.2 3e-14 seq1576460 84.2 3e-14 seq1559070 80.6 4e-13 seq418956 80.6 4e-13 >seq636314 Length=4851 Score = 257 bits (284), Expect = 3e-66 Identities = 208/247 (84%), Gaps = 6/247 (2%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| || Sbjct 1487 TCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TC 1545 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCA-TAGTC 134 || || | ||||| | |||| | |||||||||||||| | | | |||| | | Sbjct 1546 AATCT-CGTGTGGCTATACGCCACTTGTCCCTCTAAGAAGTTGGACGCGGACCACTCGGG 1604 Query 135 GATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAAT 191 | | | | |||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 1605 GGTCGCGTAACTATTTAGCATGTGGGAGTCTCGTTCGTTATCGGAATTAACCAGACAAAT 1664 Query 192 CACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCA 251 | |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| Sbjct 1665 CGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCA 1724 Query 252 ATCTGTC 258 ||||||| Sbjct 1725 ATCTGTC 1731 >seq415028 Length=594 Score = 170 bits (188), Expect = 3e-40 Identities = 108/117 (92%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||| || ||||||||||||||| |||||||||||||||||| |||||||| Sbjct 296 CTATTTAGCATGTGGGAGTCTCGTTCGTTATCAGAATTAACCAGACAAATCGCTCCACCA 355 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| Sbjct 356 ACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCAATCTGTC 412 >seq2039351 Length=686 Score = 167 bits (184), Expect = 4e-39 Identities = 107/117 (91%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||| || ||||||||||||||||||||||| ||||||||| |||||||| Sbjct 93 CTATTTAGCATGTGGGAGTCTCGTTCGTTATCGGAATTAATCAGACAAATTGCTCCACCA 152 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| Sbjct 153 ACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCAATCTGTC 209 >seq990678 Length=339 Score = 167 bits (184), Expect = 4e-39 Identities = 97/100 (97%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 73 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGC 132 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||| |||||| ||||||||||||||||||||| Sbjct 133 ACCACCACCCACAGAATCGAGAAAGAGCTATCAATCTGTC 172 >seq1980180 Length=301 Score = 149 bits (164), Expect = 1e-33 Identities = 88/92 (96%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 167 CGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCAC 226 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 301 CGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCAC 242 Query 227 CCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||| |||||| |||||||||||||||||| || Sbjct 241 CCACAGAATCGAGAAAGAGCTATCAATCTATC 210 >seq2921322 Length=220 Score = 147 bits (162), Expect = 3e-33 Identities = 101/114 (89%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||| || ||||||||| |||||||||||||||||||||||| |||||||| Sbjct 43 CTATTTAGCATGTAGGAGTCTCGTTCTTTATCGGAATTAACCAGACAAATCGCTCCACCA 102 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCT 255 |||||||| | ||| ||||||||||||| ||| || |||||||||||||||||| Sbjct 103 ACTAAGAATGACCACGCACCACCACCCACAGACTCGAGAAAGAGCTATCAATCT 156 >seq1862775 Length=521 Score = 143 bits (158), Expect = 4e-32 Identities = 102/117 (87%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| || |||| ||| ||| |||||||||||||| ||||| |||||||| Sbjct 456 CTAATTAGCATGTGGGAGTCTGGTTTGTTGTCGGAATTAACCAGGCAAATGGCTCCACCA 397 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||| |||||| |||||||||||||||||||| Sbjct 396 ACTAAGAACGGCCATGCACCACCACCCACAGAATCGGGAAAGAGCTATCAATCTGTC 340 >seq1529994 Length=1040 Score = 141 bits (156), Expect = 1e-31 Identities = 89/96 (93%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 162 TCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACC 221 || || ||||||| |||||||||||||||||| ||||||||| ||||||||||||||||| Sbjct 986 TCATTTGTTATCGCAATTAACCAGACAAATCATTCCACCAACGAAGAACGGCCATGCACC 927 Query 222 ACCACCCATAGAATCAAGAAAGAGCTATCAATCTGT 257 |||||||| ||||||||||||||| ||||||||||| Sbjct 926 ACCACCCACAGAATCAAGAAAGAGGTATCAATCTGT 891 >seq128206 Length=1335 Score = 120 bits (132), Expect = 5e-25 Identities = 83/94 (88%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||||||| || || ||||| |||||||||| ||||||||||||||||| |||||||| Sbjct 91 CTATTTATCATGTGGTAGTCTCATTCGTTATCGTAATTAACCAGACAAATCGCTCCACCA 150 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAAT 235 ||||||||| |||||||||||||||||| ||||| Sbjct 151 ACTAAGAACCGCCATGCACCACCACCCACAGAAT 184 >seq43850 Length=2523 Score = 114 bits (126), Expect = 2e-23 Identities = 77/86 (90%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||||||| || || ||| |||||||||||||| ||||||||||||||||||||||| Sbjct 113 CTATTTAACATGTGGGAGTCGTGTTCGTTATCGGAACTAACCAGACAAATCACTCCACCA 54 Query 202 ACTAAGAACGGCCATGCACCACCACC 227 |||||||||||||||||||||||||| Sbjct 53 ACTAAGAACGGCCATGCACCACCACC 28 >seq448526 Length=283 Score = 109 bits (120), Expect = 8e-22 Identities = 77/88 (88%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 171 ATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCAT 230 || |||| ||||| |||||||| | |||||||| ||||| ||||||| |||||||||| Sbjct 278 ATAGGAAATAACCCGACAAATCGCACCACCAACCAAGAATGGCCATGTCCCACCACCCAC 219 Query 231 AGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||| ||||||||||||||||||||| Sbjct 218 AGAATCGAGAAAGAGCTATCAATCTGTC 191 >seq1603238 Length=617 Score = 107 bits (118), Expect = 3e-21 Identities = 73/82 (89%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 176 AATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAAT 235 ||||||||||||||||| |||||||||| |||||| |||||||| || |||||| || || Sbjct 617 AATTAACCAGACAAATCGCTCCACCAACGAAGAACAGCCATGCATCATCACCCACAGCAT 558 Query 236 CAAGAAAGAGCTATCAATCTGT 257 | ||||||||||||||| |||| Sbjct 557 CGAGAAAGAGCTATCAACCTGT 536 >seq2609313 Length=651 Score = 84.2 bits (92), Expect = 3e-14 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||| || | ||||||||||||||| |||||||||||||||||| |||| || Sbjct 570 CTATTTAGCAAGTGAGAGTCTCGTTCGTTATCAGAATTAACCAGACAAATCGTTCCAACA 511 Query 202 ACTAAGAAC 210 ||| ||||| Sbjct 510 ACTTAGAAC 502 >seq1681212 Length=615 Score = 84.2 bits (92), Expect = 3e-14 Identities = 80/99 (81%), Gaps = 4/99 (4%) Strand=Plus/Minus Query 18 AGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 77 ||||||||| ||||| |||| | |||||||||| ||||||||||||||||||| ||||| Sbjct 480 AGTGTAGCGTTCGTGCAGCCCCGGACATCTAAGGTCATCACAGACCTGTTATTG-CTCAA 422 Query 78 ACTTCCAT-TGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 || ||| ||||| | | || || ||||||||||| Sbjct 421 TCT--CATGTGGCTATATGTCATCTGTACCTCTAAGAAG 385 >seq1576460 Length=703 Score = 84.2 bits (92), Expect = 3e-14 Identities = 64/75 (85%), Gaps = 2/75 (3%) Strand=Plus/Minus Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200 |||||||| || || ||||| ||||||||| |||||||| ||||||||| ||||||| Sbjct 625 GCTATTTAACACGTG--GGTCTTGTTCGTTATTGGAATTAATCAGACAAATTGCTCCACC 568 Query 201 AACTAAGAACGGCCA 215 | ||||||||||||| Sbjct 567 ATCTAAGAACGGCCA 553 >seq1559070 Length=1503 Score = 80.6 bits (88), Expect = 4e-13 Identities = 75/94 (80%), Gaps = 1/94 (1%) Strand=Plus/Minus Query 160 TCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCA 219 ||| ||| ||||| ||||||| ||||||||||| || ||||||| ||| |||| | Sbjct 1067 TCTTGTTTGTTATTGGAATTACACAGACAAATCATTCAACCAACT-GGAAGCAGCATGAA 1009 Query 220 CCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 |||||||||| ||||| |||| |||||||||| Sbjct 1008 CCACCACCCACCGAATCCTGAAAAAGCTATCAAT 975 >seq418956 Length=490 Score = 80.6 bits (88), Expect = 4e-13 Identities = 59/69 (86%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||| || |||||| ||||||| | |||||||||||||||| |||||||| Sbjct 212 CTATTTAGCATGTGGGAGTCTCGCTCGTTATTGCAATTAACCAGACAAATTGCTCCACCA 271 Query 202 ACTAAGAAC 210 ||||||||| Sbjct 272 ACTAAGAAC 280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 773933496846