Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leucoraja_20erinacea_20[genbank_20GCA_5F000238235.1_202011-12-15] 2,962,366 sequences; 1,555,461,038 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq636314 185 2e-44 seq157165 100 5e-19 seq1681212 75.2 2e-11 >seq636314 Length=4851 Score = 185 bits (204), Expect = 2e-44 Identities = 198/258 (77%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 1584 CTTCTTAGAGGGACAAGTGGCGTATAGCCACACGA-GATTGAG-CAATAACAGGTCTGTG 1527 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||||||||||||||||| | || || || | Sbjct 1526 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGAATGGATCAGCGTGTGTCTAC 1467 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| |||| |||| |||||| | | || | | ||||| | ||||| | | |||| Sbjct 1466 CCTACGCCGCCAGGTGCGGGTAACCCGTTGAACCCCATTCGTGATTGGGATCGGGAATTG 1407 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| | | ||||| ||| |||||||||| Sbjct 1406 CAATTATTTCCCGTGAACGAGGAATTCCCAGTAAGTGTGGGTCATAAGCTCGCGTTGATT 1347 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 1346 AAGTCCCTGCCCTTTGTA 1329 >seq157165 Length=894 Score = 100 bits (110), Expect = 5e-19 Identities = 152/212 (72%), Gaps = 16/212 (8%) Strand=Plus/Minus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| |||||||||||||||||||||||||||||| | |||| ||| Sbjct 606 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCAGGGC-----------TAC 559 Query 166 ACTGACAGAGCCAACGAGT-TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAA- 223 ||||| | || | || || | | | |||| ||| || |||||| |||||| Sbjct 558 ACTGAATGGATCAGCATGTGTCGAC-CATACGCCGTCAGGAGCGGATAATCT-GTTAAAT 501 Query 224 CTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTA 283 | | |||| | | ||||| | | |||||||||||| | | | ||||||| | ||||||| Sbjct 500 CCCAGTCGAGATTGGGATCGGGAATTGCAATTATTTCCCGTGCACGAGGATTTCCTAGTA 441 Query 284 AGCGCGTGTCATCAGCACGCGTTGATTACGTC 315 || | | ||||| ||| |||||||||| ||| Sbjct 440 AGTGTGCGTCATAAGCTTGCGTTGATTAAGTC 409 >seq1681212 Length=615 Score = 75.2 bits (82), Expect = 2e-11 Identities = 55/63 (87%), Gaps = 1/63 (2%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| ||||||||||||||||||| |||||||||| | |||| ||||| |||||| Sbjct 419 AGATTGAG-CAATAACAGGTCTGTGATGACCTTAGATGTCCGGGGCTGCACGAACGCTAC 477 Query 166 ACT 168 ||| Sbjct 478 ACT 480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 919140469248