Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leucoraja_20erinacea_20[genbank_20GCA_5F000238235.1_202011-12-15] 2,962,366 sequences; 1,555,461,038 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq2937119 302 1e-79 seq2634206 271 2e-70 seq1661095 257 5e-66 seq2778033 250 8e-64 seq59455 165 3e-38 seq43819 165 3e-38 seq2877325 163 9e-38 seq1538919 161 3e-37 seq1476238 161 3e-37 seq1573538 132 2e-28 seq2297384 129 2e-27 seq33715 118 3e-24 seq659804 116 1e-23 seq1666623 111 5e-22 seq1555585 98.7 3e-18 seq141265 93.3 1e-16 seq1599247 80.6 8e-13 seq732006 80.6 8e-13 >seq2937119 Length=388 Score = 302 bits (334), Expect = 1e-79 Identities = 182/192 (95%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 241 CACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGG 300 |||||||||||||||||||| ||| |||||| | | |||||||||||||||||||||| Sbjct 27 CACTTATTCTACACCTCTCATGTCTCTTCACAGTGCCAGACTAGAGTCAAGCTCAACAGG 86 Query 301 GTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAG 360 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 87 GTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAG 146 Query 361 TAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGA 420 ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 147 TAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATGACGA 206 Query 421 GGCATTTGGCTA 432 |||||||||||| Sbjct 207 GGCATTTGGCTA 218 >seq2634206 Length=1508 Score = 271 bits (300), Expect = 2e-70 Identities = 280/365 (77%), Gaps = 15/365 (4%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||||||| |||| |||| | ||||||||||||||||||| | Sbjct 1145 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACG 1204 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 || | |||| ||| ||||||||| ||||||||||||||| || |||| | ||| || Sbjct 1205 GTGTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGCCACTGTCTCCGGAGCGGGTC 1264 Query 127 G-----GCCCGCGAAGGACCTTAACGCCAGAAAATGG------TCGGTGAAGACCAGTTC 175 | | |||| || ||| |||||| | |||| | || | | Sbjct 1265 GCGCCCGGCCGCCCGGGCGCTTCCGACCAGAAGCGAGAGCCCCTCGGGGCTCGCCT-TCC 1323 Query 176 CGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG---CCGAA 232 ||| ||| | ||||| |||||||||| || ||||||||||||||| | ||| | Sbjct 1324 CGCCTCACCGGGTAAGTGAAAAAACGATCAGAGTAGTGGTATTTCACCGACAACCCCGGA 1383 Query 233 ACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGC 292 | ||||||||||||||||||||||| ||| |||||| | | |||||||||||||| Sbjct 1384 GGGCTTCCCACTTATTCTACACCTCTCATGTCTCTTCACAGTGCCAGACTAGAGTCAAGC 1443 Query 293 TCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCG 352 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1444 TCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCG 1503 Query 353 CTAGA 357 ||||| Sbjct 1504 CTAGA 1508 >seq1661095 Length=1047 Score = 257 bits (284), Expect = 5e-66 Identities = 341/466 (73%), Gaps = 18/466 (4%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| || || | |||| |||||| |||| |||| | |||| || ||||||||||| Sbjct 731 CTTCTGTTCCATGGGAGGTTTCTGCCCTCCCTGAGATCGCCTTTGGCCACCTGCGTTACA 672 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 || | | || ||| ||||||| | |||||||| ||| || || || |||| ||| || Sbjct 671 GTGTGAGAGGTGTACCGCCCCTGTCAAACTCCACACTTGCCACGCTCTACAACACGGGTC 612 Query 127 --GGCCCGCGA---AGGACCTTAACGCCAGAAA--ATGGTCGGTGAAGACCAGTTC---- 175 | || || | || ||| ||| ||| | | | | | ||| | | Sbjct 611 ACGTCCAGCCACCCAGTCACTTCTAACCACAAACGAGAGCCCCTCAGGACTCGCCCACCC 552 Query 176 CGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTA---TTTCACTTGCG--CCG 230 | | ||| | ||||| || |||| | || ||||||| | ||||| || || Sbjct 551 CACCTCACCGGGTAAGTGAACAAACACTCAGAGTAGTGGCAACATTTCAACGGCTGTCCC 492 Query 231 AAACGGCT-CCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCA 289 | | |||| ||||||||||| | || |||| ||| |||||| | | ||||||||||| Sbjct 491 AGAGGGCTTCCCACTTATTCCATACGTCTCTCGTCTCTTCACAGTGCCAGACTAGAGTCA 432 Query 290 AGCTCAACAGGGTCTTCTTTCCCCGCT-GATTCCGCCAAGCCCGTTCCCTTGGCTGTGGT 348 ||||||||||||||||| |||||| | ||||| |||||||| |||||||||||||||| Sbjct 431 AGCTCAACAGGGTCTTCATTCCCCATTTGATTCTGCCAAGCCTATTCCCTTGGCTGTGGT 372 Query 349 TTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTA 408 ||||||||||||| | ||||||||||||||||||||| ||||||||||||| |||| | Sbjct 371 TTCGCTAGATAGTGGGCAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGTATCACAA 312 Query 409 ATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACT 454 || |||||||||| | || |||| |||||||||||||| || ||| Sbjct 311 ATGAGATGACGAGCCTTTCAGCTATCTTAAGAGAGTCATGGTGACT 266 >seq2778033 Length=399 Score = 250 bits (276), Expect = 8e-64 Identities = 143/146 (98%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 287 TCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTG 346 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 328 TCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTG 269 Query 347 GTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCAC 406 ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| Sbjct 268 GTTTCGCTAGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCAC 209 Query 407 TAATTAGATGACGAGGCATTTGGCTA 432 |||||||||||||||||||||||||| Sbjct 208 TAATTAGATGACGAGGCATTTGGCTA 183 >seq59455 Length=2925 Score = 165 bits (182), Expect = 3e-38 Identities = 133/161 (83%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 244 TTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 303 ||||||| ||||||||||||| |||||| | |||||| |||| |||||||||||| Sbjct 1250 TTATTCTCCACCTCTCAAGTCTCTTCACAGTGCTAAACTAGAATCAAACTCAACAGGGTC 1309 Query 304 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 363 ||| ||||| ||||||| |||||||| || ||||||||| || |||| ||| ||| ||| Sbjct 1310 GTCTATCCCCACTGATTCTGCCAAGCCTGTGCCCTTGGCTATGTTTTCACTATATAATAG 1369 Query 364 ATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTC 404 |||| |||||||| ||| | ||| |||||||||||||| || Sbjct 1370 ATAGTGACAGTGGCAATTTTGTTCATCCATTCATGCGCATC 1410 >seq43819 Length=2413 Score = 165 bits (182), Expect = 3e-38 Identities = 121/141 (86%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 278 GGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCC 337 ||||||| |||||||||| ||||||| ||||||| ||||||| ||||||||||||||| Sbjct 722 GGACTAGTGTCAAGCTCATAGGGGTCTTTTTTCCCCACTGATTCTGCCAAGCCCGTTCCC 663 Query 338 TTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCAT 397 |||||| | ||||| | ||||||||| | |||||||||| ||||| ||| |||||||||| Sbjct 662 TTGGCTATTGTTTCACCAGATAGTAGGTTGGGACAGTGGAAATCTTGTTCATCCATTCAT 603 Query 398 GCGCGTCACTAATTAGATGAC 418 || || |||||||| ||||| Sbjct 602 TCGTGTTACTAATTAAATGAC 582 >seq2877325 Length=333 Score = 163 bits (180), Expect = 9e-38 Identities = 141/173 (82%), Gaps = 5/173 (3%) Strand=Plus/Minus Query 261 AGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATT 320 |||| | |||| | | ||||||| |||||||||||||||| |||||||||||||||| Sbjct 271 AGTCCCTGCACAGTGCCAGACTAGAACCAAGCTCAACAGGGTCATCTTTCCCCGCTGATT 212 Query 321 CCGCCAAG-CCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAA 379 | |||||| ||||||||||||||||| ||| | ||||| || ||||| ||||||||| Sbjct 211 CTGCCAAGCCCCGTTCCCTTGGCTGTAGTTACACTAGACAG----TAGGGTCAGTGGGAA 156 Query 380 TCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 || | || |||||| ||||| |||| ||||| || | |||||||||||||| Sbjct 155 TCCCATTCATCCATGCATGCATGTCAATAATTCGACAATGAGGCATTTGGCTA 103 >seq1538919 Length=1573 Score = 161 bits (178), Expect = 3e-37 Identities = 132/157 (84%), Gaps = 4/157 (3%) Strand=Plus/Minus Query 280 ACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTT 339 |||| | | |||| |||||||||||||| ||||| ||||||| ||| | || ||||||| Sbjct 1481 ACTATAATGAAGCCCAACAGGGTCTTCTATCCCCACTGATTCTGCCGACCC--TTCCCTT 1424 Query 340 GGCTGTGGTTTCGCTAGATAG-TAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATG 398 ||| |||||||| ||| |||| ||| ||| ||||||||||||||| ||||||| ||| Sbjct 1423 GGCAGTGGTTTCACTACATAGGTAGC-AGGACCAGTGGGAATCTCGTCCATCCATTAATG 1365 Query 399 CGCGTCACTAATTAGATGACGAGGCATTTGGCTACCT 435 | |||||||||||||||||||||| ||| |||||||| Sbjct 1364 CACGTCACTAATTAGATGACGAGGTATTAGGCTACCT 1328 >seq1476238 Length=3789 Score = 161 bits (178), Expect = 3e-37 Identities = 94/97 (97%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 437 AAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGAC 496 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 3789 AAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCACTTTGAC 3730 Query 497 ATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||| ||||||||| Sbjct 3729 ATTCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 3693 >seq1573538 Length=796 Score = 132 bits (146), Expect = 2e-28 Identities = 125/157 (80%), Gaps = 7/157 (4%) Strand=Plus/Minus Query 267 TTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCA 326 ||| ||| | | |||||| ||| ||||||| |||| |||||||| |||||||| |||| Sbjct 753 TTCTCAATGCCAGACTAG--TCAGGCTCAACTGGGTTGTCTTTCCCTGCTGATTCTGCCA 696 Query 327 AGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTT 386 |||||||| ||||| ||||||||||| ||||| ||| | | |||||||||| Sbjct 695 AGCCCGTT-CCTTGACTGTGGTTTCGTTAGATGGTAAA----GTTGATGGGAATCTCACA 641 Query 387 AATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 423 ||||||||||| || ||| ||||||||||||||||| Sbjct 640 CATCCATTCATGTGCATCAATAATTAGATGACGAGGC 604 >seq2297384 Length=247 Score = 129 bits (142), Expect = 2e-27 Identities = 94/108 (87%), Gaps = 1/108 (1%) Strand=Plus/Minus Query 285 AGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTG 344 ||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||| Sbjct 202 AGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAG-CCGTCTCCTTGGCTG 144 Query 345 TGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCA 392 |||||| |||||||||||| | ||| || ||||| | ||| ||||| Sbjct 143 TGGTTTTGCTAGATAGTAGGTTGGGGCATTGGGATTAGGGTTTATCCA 96 Score = 100 bits (110), Expect = 9e-19 Identities = 61/65 (94%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 318 ATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGG 377 |||| ||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 21 ATTCTGCCAAGCCCATTCCCTTGGCTGTGGTTCCGCTAGATAGTAGGTAGGGACAGTGGG 80 Query 378 AATCT 382 ||||| Sbjct 81 AATCT 85 >seq33715 Length=3261 Score = 118 bits (130), Expect = 3e-24 Identities = 138/182 (76%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 188 TAAGT-aaaaaaaCGATAAGGGTAGTGGTATTTCACTTGC-GC-CGAAACGGCTCCCACT 244 ||||| ||||||| ||| || ||||||||||||||| || || | | | | | ||||| Sbjct 2992 TAAGTGAAAAAAATGATCAGAGTAGTGGTATTTCACCGGCAGCTCCAGAGGACCTCCACT 2933 Query 245 TATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCT 304 |||||| |||| ||| ||| |||||| | | | ||| ||||||||||||||| || | Sbjct 2932 TATTCTGCACCCATCATGTCTCTTCACAGTGCCAGCCTAAAGTCAAGCTCAACAGAGTTT 2873 Query 305 TCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGA 364 ||||| |||||| |||||| | || | ||||||||||||| | | |||||||| Sbjct 2872 TCTTT---TGCTGATATTGCCAAGTCTTTTACTTTGGCTGTGGTTTTGTTTGATAGTAGG 2816 Query 365 TA 366 || Sbjct 2815 TA 2814 >seq659804 Length=551 Score = 116 bits (128), Expect = 1e-23 Identities = 90/107 (84%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||||||| |||| |||| | ||||||||||||||||||| | Sbjct 345 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACG 286 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 || | |||| ||| ||||||||| ||||||||||||||| || |||| Sbjct 285 GTGTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGCCACTGTC 239 >seq1666623 Length=459 Score = 111 bits (122), Expect = 5e-22 Identities = 91/110 (83%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 323 GCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCT 382 ||| ||||||||||||| ||||||||| |||||| | ||| |||||| |||| ||||| Sbjct 3 GCCCAGCCCGTTCCCTTATCTGTGGTTTTGCTAGACAATAGGTAGGGATCGTGGAAATCT 62 Query 383 CGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 | || |||||||||| | ||||||||||||||||| | | |||||||| Sbjct 63 CATTCATCCATTCAT--GTGTCACTAATTAGATGACAAAACTTTTGGCTA 110 >seq1555585 Length=1089 Score = 98.7 bits (108), Expect = 3e-18 Identities = 56/57 (98%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 376 GGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 57 >seq141265 Length=925 Score = 93.3 bits (102), Expect = 1e-16 Identities = 74/88 (84%), Gaps = 1/88 (1%) Strand=Plus/Plus Query 285 AGTCAAGCTCAACAGGGTCTTCTTTCCCC-GCTGATTCCGCCAAGCCCGTTCCCTTGGCT 343 ||||||| |||||||||| ||| ||||| |||||| ||||||||||||||||||||| Sbjct 230 AGTCAAGGTCAACAGGGTTGTCTGTCCCCTGCTGATGTTGCCAAGCCCGTTCCCTTGGCT 289 Query 344 GTGGTTTCGCTAGATAGTAGATAGGGAC 371 |||||||| ||||| | | | | ||||| Sbjct 290 GTGGTTTCACTAGACAATGGGTGGGGAC 317 >seq1599247 Length=1333 Score = 80.6 bits (88), Expect = 8e-13 Identities = 100/137 (73%), Gaps = 5/137 (4%) Strand=Plus/Minus Query 286 GTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGT 345 ||||| |||||||||||| ||||| |||| | |||| || ||| ||| |||| | Sbjct 960 GTCAACCTCAACAGGGTC-----TCCCCACTGACCCTGCCATGCTCGTCCCCCCGGCTAT 906 Query 346 GGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCA 405 ||| || | || ||||| | ||||| || |||| || | | |||||||| |||| Sbjct 905 GGTGTCTCCCGAGAGTAGGCCGCGACAGAAGGGCTCTCTTTCACCTATTCATGCCTGTCA 846 Query 406 CTAATTAGATGACGAGG 422 |||| |||||| ||||| Sbjct 845 CTAAGTAGATGTCGAGG 829 >seq732006 Length=435 Score = 80.6 bits (88), Expect = 8e-13 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 251 ACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTC 310 |||||||||| ||| |||||| | | |||||||||||||||||||||||||||||||| Sbjct 79 ACACCTCTCATGTCTCTTCACAGTGCCAGACTAGAGTCAAGCTCAACAGGGTCTTCTTTC 138 Query 311 CC 312 || Sbjct 139 CC 140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1586759391168