Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leucoraja_20erinacea_20[genbank_20GCA_5F000238235.1_202011-12-15] 2,962,366 sequences; 1,555,461,038 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq2634206 100 5e-19 seq1451749 95.1 2e-17 seq1426846 95.1 2e-17 seq1232059 95.1 2e-17 seq1197926 95.1 2e-17 seq1189995 95.1 2e-17 seq1327927 82.4 1e-13 seq1169849 78.8 1e-12 >seq2634206 Length=1508 Score = 100 bits (110), Expect = 5e-19 Identities = 92/114 (81%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | ||| || | ||||| | || | || |||| || || | Sbjct 820 GTACGAGAGGAACCGCAGG-TTCGGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 763 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||| || |||||||| |||||||||||||||||||||||| Sbjct 762 GGTGCGAAGCTACCATCCGCGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 709 >seq1451749 Length=234 Score = 95.1 bits (104), Expect = 2e-17 Identities = 91/114 (80%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||| |||||||||| | ||| || | ||||| | || | || |||| || || | Sbjct 87 GTACGCGAGGAACCGCAGG-TTCGGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 144 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||| || |||||||| |||||||||||||||||||||||| Sbjct 145 GGTGCGAAGCTACCATCCGCGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 198 >seq1426846 Length=216 Score = 95.1 bits (104), Expect = 2e-17 Identities = 91/114 (80%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | ||| || | ||||| | || | || |||| || || | Sbjct 36 GTACGAGAGGAACCGCAGG-TTCGGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 93 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||| || |||||||| ||||| |||||||||||||||||| Sbjct 94 GGTGCGAAGCTACCATCCGCGGGATTATGACTGAAAGCCTCTAAGTCAGAATCC 147 >seq1232059 Length=278 Score = 95.1 bits (104), Expect = 2e-17 Identities = 90/114 (79%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | | | | | ||||| | || | || |||| || || | Sbjct 131 GTACGAGAGGAACCGCAGGCTC--GGACATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 188 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||| || |||||||| |||||||||||||||||||||||| Sbjct 189 GGTGCGAAGCTACCATCCGCGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 242 >seq1197926 Length=281 Score = 95.1 bits (104), Expect = 2e-17 Identities = 90/114 (79%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | | | | | ||||| | || | || |||| || || | Sbjct 148 GTACGAGAGGAACCGCAGGGTC--GGACATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 91 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||| || |||||||| |||||||||||||||||||||||| Sbjct 90 GGTGCGAAGCTACCATCCGCGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 37 >seq1189995 Length=234 Score = 95.1 bits (104), Expect = 2e-17 Identities = 91/114 (80%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||| ||||| | ||| || | ||||| | || | || |||| || || | Sbjct 148 GTACGAGAGGCACCGCAGG-TTCGGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 91 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||| || |||||||| |||||||||||||||||||||||| Sbjct 90 GGTGCGAAGCTACCATCCGCGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 37 >seq1327927 Length=242 Score = 82.4 bits (90), Expect = 1e-13 Identities = 82/104 (79%), Gaps = 2/104 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | ||| || | ||||| | || | || |||| || || | Sbjct 141 GTACGAGAGGAACCGCAGG-TTCGGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 198 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAA 104 | |||||||||||||| || |||||||| |||||||||||||| Sbjct 199 GGTGCGAAGCTACCATCCGCGGGATTATGACTGAACGCCTCTAA 242 >seq1169849 Length=207 Score = 78.8 bits (86), Expect = 1e-12 Identities = 80/102 (78%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | ||| || | ||||| | || | || |||| || || | Sbjct 21 GTACGAGAGGAACCGCAGG-TTCGGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 78 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCT 102 | |||||||||||||| || |||||||| |||||||||||| Sbjct 79 GGTGCGAAGCTACCATCCGCGGGATTATGACTGAACGCCTCT 120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795690663424