Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leucoraja_20erinacea_20[genbank_20GCA_5F000238235.1_202011-12-15] 2,962,366 sequences; 1,555,461,038 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq636314 466 5e-129 seq1571503 297 6e-78 seq1361606 185 3e-44 seq2507054 145 2e-32 seq1503627 136 1e-29 seq1111925 127 6e-27 >seq636314 Length=4851 Score = 466 bits (516), Expect = 5e-129 Identities = 422/521 (81%), Gaps = 19/521 (4%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 |||||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||| Sbjct 2450 GTACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACC 2509 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2510 TCCCCGAGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 2569 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||| Sbjct 2570 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTGGTAACCATGGT 2629 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||| || ||||||||||||||||||||||||| ||| ||||| | | |||||| | Sbjct 2630 AGGCACAGATAGTACCATCGAAAGTTGATAGGGCAGACATTCGAATGTATCGTCGCCGTC 2689 Query 240 TCAAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAAGGAGCCCCG--AAGGGCG 295 | ||| | | |||| | | ||||| || ||||||| | || | ||| || Sbjct 2690 ACGAGGACGTACGATCGGCCCCAGGTTATCTAGAGTCACCAAAGCTGCCGGGCAAGCCCG 2749 Query 296 --TTGGTTTTTTATCTAATAAATACAC----CCCTTCCGAAG---TC-GGGGTTTTTAGC 345 |||| |||| ||| |||||| ||| | | ||| | | || | | | || || Sbjct 2750 GATTGG-TTTTGGTCTGATAAATGCACGCATCACCTCCAATGGGCTCAGCGCTCGTTGGC 2808 Query 346 ATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAA--GGTACTATCAAATAAAC 403 |||||||||||||||||||||||| |||||||| ||| || | | |||||| ||| Sbjct 2809 ATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACAAAGCGAGCGATCAAAGGAAC 2868 Query 404 GATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACAT 463 ||||||||||||||||||||||||||||||||||||| | | | ||||||||||| Sbjct 2869 CATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGTGTACTTAGACAT 2928 Query 464 GCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||| |||||||||| Sbjct 2929 GCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 2968 >seq1571503 Length=718 Score = 297 bits (328), Expect = 6e-78 Identities = 357/476 (75%), Gaps = 37/476 (8%) Strand=Plus/Minus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| | ||||||||||||||| ||||||| |||||||||||||||||| || |||||| Sbjct 717 TATTTTTCGTCACTACCTCCCCGAGTCGGGAGTGGGTAATTTGCGCGCCTACTACCTTCC 658 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 ||||||||||||||||||||||||||||| |||| ||||||||| || |||| Sbjct 657 TTGGATGTGGTAGCCGTTTCTCAGGCTCCTTCTCTGGAATCGAAGCCCAATT-------- 606 Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222 || | ||||||||| || || |||||| |||||||||| ||||||| ||| Sbjct 605 ---GTGGTAACCATGGTACGCACAGATAGTACCATTGAAAGTTGATTGGGCAGACATTAA 549 Query 223 AATGAACCATCGCCGGCTCAAGGCCATGCG-ATTCGTT---AAGTTATTATGAATCACCA 278 |||| | |||||| | | ||| ||| | ||| | ||||| || |||||| Sbjct 548 AATGTATTGTCGCCGTCACGAGG--ATGAACAATCGGCCCCAGGTTATCTGGAGTCACCA 491 Query 279 AGGAGCCCCG--AAGGGCG--TTGGTTTTTTATCTAATAAATACACCCCTTCCGAAG--- 331 | | | | ||| || |||||||| ||| || || | ||| | | Sbjct 490 AAGCTGTCGGGCAAGTCCGGATTGGTTTTGG-TCTGAT-----CATC---TCCAATGGGC 440 Query 332 TCGGGGTTT-TTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTA 390 || | | | ||||||||||||||||||||||||||||| ||||| | ||| || || Sbjct 439 TCAGCGCTCGTTAGCATGTATTAGCTCTAGAATTACCACAATTATCTAAGTAAGAAAGTG 380 Query 391 --CTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTG 448 | |||||| ||| |||||||||||||||||||||||||||||| |||||| | | Sbjct 379 AGCGATCAAAGGAACCATAACTGATTTAATGAGCCATTCGCAGTTTGACTGTACCAGTCG 320 Query 449 CTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 | ||||||||||||||||||||||||||||||||||||||||| |||| ||||| Sbjct 319 TGTGTACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATG-CTACCGGCAG 265 >seq1361606 Length=273 Score = 185 bits (204), Expect = 3e-44 Identities = 142/166 (86%), Gaps = 3/166 (2%) Strand=Plus/Minus Query 341 TTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTA--CTATCAAA 398 || |||||||||||||||||||||||||| |||||||| ||| || | | |||||| Sbjct 235 TTGGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACAAAGCGAGCGATCAAA 176 Query 399 TAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTA 458 ||| ||||||||||||||||||||||||||||||||||||| | | | | |||| Sbjct 175 GGAACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACTGGCCGTGTGTTCTTA 116 Query 459 GACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 115 GACATGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 71 >seq2507054 Length=1030 Score = 145 bits (160), Expect = 2e-32 Identities = 100/112 (89%), Gaps = 1/112 (1%) Strand=Plus/Plus Query 393 ATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTA 452 |||||| ||| ||||||||||||||||||||||||||||||||||||| | | | Sbjct 910 ATCAAAGGAACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGTG 969 Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 970 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 1020 >seq1503627 Length=1496 Score = 136 bits (150), Expect = 1e-29 Identities = 91/100 (91%), Gaps = 1/100 (1%) Strand=Plus/Plus Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATG 464 ||||||||||||||||||||||||||||||||||||| | | | |||||||||||| Sbjct 3 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGTGTACTTAGACATG 62 Query 465 CATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||| |||||||||| Sbjct 63 CATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 101 >seq1111925 Length=254 Score = 127 bits (140), Expect = 6e-27 Identities = 86/95 (91%), Gaps = 1/95 (1%) Strand=Plus/Minus Query 410 TGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGG 469 |||||||||||||||||||||||||||||||| | | | ||||||||||||||||| Sbjct 254 TGATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGTGTACTTAGACATGCATGG 195 Query 470 CTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||| |||||||||| Sbjct 194 CTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1465656423936