Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Petromyzon_20marinus_20[genbank_20GCA_5F000148955.1_202010-10-07] 25,005 sequences; 885,534,757 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq77 188 1e-45 seq22946 176 7e-42 seq8930 172 8e-41 seq24957 170 3e-40 seq16 149 9e-34 seq6871 102 1e-19 seq7562 95.1 2e-17 seq1971 93.3 6e-17 seq3323 91.5 2e-16 >seq77 Length=790685 Score = 188 bits (208), Expect = 1e-45 Identities = 203/258 (79%), Gaps = 8/258 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| |||||||||||||||| |||||| | Sbjct 158221 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACTCGCGCTTACTGGGAATT-C 158278 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | |||| || |||| | ||||| ||||||| |||||| | || Sbjct 158279 CTCGTTCATGGGGAACAGTTCCAATCCCCAATCCCTATCACGAATGGGTTTCAACGGGTT 158338 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT-CAGTGTAGCGCGCGTGC 178 |||| |||| |||| |||| | || || ||| | ||| ||||||||||||||||| Sbjct 158339 ACCCACGCCTGCCGGCGAAGGGCGGACACACGCTGA-TCCATTCAGTGTAGCGCGCGTGC 158397 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238 ||||| | |||||||||||||||||||||||||||||| ||||| || |||| || || Sbjct 158398 GGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGG-CTGAA 158455 Query 239 AGGCCATC-TCCCTCGAA 255 || | || |||||| || Sbjct 158456 AGCCACTCGTCCCTCTAA 158473 >seq22946 Length=172360 Score = 176 bits (194), Expect = 7e-42 Identities = 200/258 (78%), Gaps = 8/258 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| |||| |||||||||||||||| |||||| | Sbjct 169656 GTACAAAGGGCAGGGACTTAATCAACGCACGCTT-ATGACTCGCGCTTACTGGGAATT-C 169713 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 || ||| | | |||| || |||| | ||||| ||||||| |||||| | || Sbjct 169714 CTTGTTCATGGGGAACAGTTCCAATCCCCAATCCCTATCACGAATGGGTTTCAACGGGTT 169773 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT-CAGTGTAGCGCGCGTGC 178 |||| |||| |||| |||| | || |||||| | ||| ||||||||||||||||| Sbjct 169774 ACCCACGCCTGCCGGCGAAGGGCGGACACACGTTGA-TCCATTCAGTGTAGCGCGCGTGC 169832 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238 |||| | |||||||||||||||||||||||||||||| |||| || |||| || || Sbjct 169833 GGCCTCGGACATCTAAGGGCATCACAGACCTGTTATTG-TTCAATCTCGTGTGG-CTGAA 169890 Query 239 AGGCCATC-TCCCTCGAA 255 || | || |||||| || Sbjct 169891 AGCCACTCGTCCCTCTAA 169908 >seq8930 Length=22886 Score = 172 bits (190), Expect = 8e-41 Identities = 199/258 (77%), Gaps = 15/258 (6%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| |||||||||||||| | |||||| | Sbjct 10649 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACTCGCGCTTAGTGGGAATT-C 10592 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | |||| || |||| ||| ||||||| |||||| | || Sbjct 10591 CTCGTTCATGGGGAACAGTTCCAAT-------CCCTATCACGAATGGGTTTCAACGGGTT 10539 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT-CAGTGTAGCGCGCGTGC 178 |||| |||| |||| |||| | || || ||| | ||| ||||||||||||||||| Sbjct 10538 ACCCACGCCTGCCGGCGAAGGGCGGACACACGCTGA-TCCATTCAGTGTAGCGCGCGTGC 10480 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238 ||||| | |||||||||||||||||||||||||||||| ||||| || |||| || || Sbjct 10479 GGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGG-CTGAA 10422 Query 239 AGGCCATC-TCCCTCGAA 255 || | || |||||| || Sbjct 10421 AGCCACTCGTCCCTCTAA 10404 >seq24957 Length=375254 Score = 170 bits (188), Expect = 3e-40 Identities = 199/258 (77%), Gaps = 12/258 (5%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| ||||||||| |||||| |||||| | Sbjct 178811 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACTCGCACTTACTGGGAATT-C 178754 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 |||||| | | |||| || ||| ||||| ||||||| |||||| || || Sbjct 178753 CTCGTTCATGGGGAACAGTTCCAAACCCAAATCCCTATCACGAATGGGTTTCAACAGGTT 178694 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT-CAGTGTAGCGCGCGTGC 178 |||| |||| |||||| | || || ||| | ||| ||||||||||||||||| Sbjct 178693 ACCCACGCCTG----CCAAGGGCGGACACACGCTGA-TCCATTCAGTGTAGCGCGCGTGC 178639 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238 ||||| | |||||||||||||||||||||||||||||| ||||| || |||| || || Sbjct 178638 GGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGG-CTGAA 178581 Query 239 AGGCCATC-TCCCTCGAA 255 || | || |||||| || Sbjct 178580 AGCCACTCGTCCCTCTAA 178563 >seq16 Length=1685948 Score = 149 bits (164), Expect = 9e-34 Identities = 196/255 (77%), Gaps = 14/255 (5%) Strand=Plus/Plus Query 3 ACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCT 62 ||||||||||||||| || ||||||| ||||| |||||||||||||||| |||||| ||| Sbjct 958278 ACAAAGGGCAGGGAC-TAATCAACGCAAGCTT-ATGACTCGCGCTTACTGGGAATT-CCT 958334 Query 63 CGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACC 122 |||| | | || || |||| | ||||| ||| ||| ||||| | | ||| Sbjct 958335 CGTTCATGGGGAAG--TTCCAATCCCC-ATCCCTATCCGAATGGG-TTTCACGGGT-ACC 958389 Query 123 CGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT-CAGTGTAGCGCGCGTGCGGC 181 | |||| |||| |||| | || || ||| | ||| |||||||||||||||||||| Sbjct 958390 CACGCCTGCCGGCGAAGGGCGGACACACGCTGA-TCCATTCAGTGTAGCGCGCGTGCGGC 958448 Query 182 CCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGG 241 || | |||||||||||||||||||||||||||||| ||| |||| |||| || |||| Sbjct 958449 CCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC-AACTCGTGTGG-CTGAAAGC 958505 Query 242 CCATC-TCCCTCGAA 255 | || |||||| || Sbjct 958506 CACTCGTCCCTCTAA 958520 Score = 102 bits (112), Expect = 1e-19 Identities = 105/131 (80%), Gaps = 5/131 (4%) Strand=Plus/Plus Query 127 CCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT-CAGTGTAGCGCGCGTGCGGCCCAG 185 |||| |||| |||| | || || ||| | ||| |||||||||||||||||||||| | Sbjct 800337 CCTGCCGGCGAAGGGCGGACACACGCTGA-TCCATTCAGTGTAGCGCGCGTGCGGCCCCG 800395 Query 186 AACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCAT 245 |||||||||||||||||||||||||||||| ||||| || |||| || |||| | | Sbjct 800396 GACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGG-CTGAAAGCCACT 800453 Query 246 C-TCCCTCGAA 255 | |||||| || Sbjct 800454 CGTCCCTCTAA 800464 >seq6871 Length=17114 Score = 102 bits (112), Expect = 1e-19 Identities = 136/181 (75%), Gaps = 6/181 (3%) Strand=Plus/Plus Query 78 ATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TTACCCGGACCTGTCGGCC 136 ||| |||| | ||||| || |||| |||||| | |||||| |||| |||| Sbjct 10355 ATTCCAATCCCCCATCCCTATAACGAATGGGTTTCAACGGGTTACCCACGCCTGCCGGCG 10414 Query 137 AAGGTGATAGACTCGTTGAATACAT-CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAG 195 |||| | || || ||| | ||| ||||||| |||||||||||||| | ||||||||| Sbjct 10415 AAGGGCGGACACACGCTGA-TCCATTCAGTGTAACGCGCGTGCGGCCCCGGACATCTAAG 10473 Query 196 GGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCATC-TCCCTCGA 254 ||||||||||||||||||||| ||||| || |||| || |||| | || |||||| | Sbjct 10474 GGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGG-CTGAAAGCCACTCGTCCCTCTA 10531 Query 255 A 255 | Sbjct 10532 A 10532 >seq7562 Length=14454 Score = 95.1 bits (104), Expect = 2e-17 Identities = 163/227 (72%), Gaps = 11/227 (5%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||| ||||| ||||||| || | || |||| |||||| || |||||| |||||| | Sbjct 5651 GTAGAAAGGACAGGGACTTA----AGGCAGGCTT-ATGACTAGCACTTACTGGGAATT-C 5704 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || | ||||||| | ||||| ||||| | |||||| | || Sbjct 5705 CTCGTTCATGGGGAATAGTTGCAATCCCCAATCCC-ATCACAAATGGGTTTCAATGGGTT 5763 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT-CAGTGTAGCGCGCGTGC 178 |||| |||| | || |||| | || | ||| | ||| ||||||||||| | ||| Sbjct 5764 ACCCACGCCTGCCAGCGAAGGGCGGATACATGCTGA-TCCATTCAGTGTAGCGCACATGC 5822 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 || || | |||||||| ||||| |||||||| ||||| ||||| || Sbjct 5823 GGTCCCGGACATCTAAAGGCATTTCAGACCTGGTATTG-CTCAATCT 5868 >seq1971 Length=50295 Score = 93.3 bits (102), Expect = 6e-17 Identities = 84/103 (82%), Gaps = 2/103 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| |||||||||||||||| |||| ||| Sbjct 45052 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACTCGCGCTTACTGGGAA-TTC 44995 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA 103 ||| || | | |||| || |||| | ||||| ||||||| Sbjct 44994 CTCATTCATGGGGAACAGTTCCAATCCCCAATCCCTATCACGA 44952 >seq3323 Length=33770 Score = 91.5 bits (100), Expect = 2e-16 Identities = 81/99 (82%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 3 ACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCT 62 ||||||||||||||| || ||||||| ||||| |||||||||||||||| |||| ||||| Sbjct 25740 ACAAAGGGCAGGGACTTATTCAACGCAAGCTT-ATGACTCGCGCTTACTGGGAA-TTCCT 25797 Query 63 CGTTGAAGACCAACAATTGCAATGATCTATCCCCATCAC 101 |||| | | |||| || |||| | ||||| ||||| Sbjct 25798 CGTTCATGGGGAACAGTTCCAATCCCCAATCCCTATCAC 25836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751817838575