Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Petromyzon_20marinus_20[genbank_20GCA_5F000148955.1_202010-10-07] 25,005 sequences; 885,534,757 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq8930 80.6 1e-13 seq6871 80.6 1e-13 seq4673 80.6 1e-13 seq77 80.6 1e-13 seq16 73.4 2e-11 >seq8930 Length=22886 Score = 80.6 bits (88), Expect = 1e-13 Identities = 88/117 (75%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| |||||| |||| || ||| |||| || |||| ||||| |||| Sbjct 10125 GAACCCAAACACTTTGGTTTCCCGCAAGCTGCCAGGCAGGTCATGGGAATAACGCCGCCT 10066 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| | ||| ||||| ||||| ||| |||| | ||||||||||||| |||||| Sbjct 10065 GATCGCCAGTTGGCATCGTTTATGGTCGGAACTAGGGCGGTATCTGATCGCCTTCGA 10009 >seq6871 Length=17114 Score = 80.6 bits (88), Expect = 1e-13 Identities = 88/117 (75%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| |||||| |||| || ||| |||| || |||| ||||| |||| Sbjct 10811 GAACCCAAACACTTTGGTTTCCCGCAAGCTGCCAGGCAGGTCATGGGAATAACGCCGCCT 10870 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| | ||| ||||| ||||| ||| |||| | ||||||||||||| |||||| Sbjct 10871 GATCGCCAGTTGGCATCGTTTATGGTCGGAACTAGGGCGGTATCTGATCGCCTTCGA 10927 >seq4673 Length=24731 Score = 80.6 bits (88), Expect = 1e-13 Identities = 88/117 (75%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| |||||| |||| || ||| |||| || |||| ||||| |||| Sbjct 17744 GAACCCAAACACTTTGGTTTCCCGCAAGCTGCCAGGCAGGTCATGGGAATAACGCCGCCT 17685 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| | ||| ||||| ||||| ||| |||| | ||||||||||||| |||||| Sbjct 17684 GATCGCCAGTTGGCATCGTTTATGGTCGGAACTAGGGCGGTATCTGATCGCCTTCGA 17628 >seq77 Length=790685 Score = 80.6 bits (88), Expect = 1e-13 Identities = 88/117 (75%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| |||||| |||| || ||| |||| || |||| ||||| |||| Sbjct 158752 GAACCCAAACACTTTGGTTTCCCGCAAGCTGCCAGGCAGGTCATGGGAATAACGCCGCCT 158811 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| | ||| ||||| ||||| ||| |||| | ||||||||||||| |||||| Sbjct 158812 GATCGCCAGTTGGCATCGTTTATGGTCGGAACTAGGGCGGTATCTGATCGCCTTCGA 158868 >seq16 Length=1685948 Score = 73.4 bits (80), Expect = 2e-11 Identities = 84/113 (74%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 5 CCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCGATC 64 ||||| |||||| |||| || ||| |||| || |||| ||||| |||| |||| Sbjct 1265887 CCAAACACTTTGGTTTCCCGCAAGCTGCCAGGCAGGTCATGGGAATAACGCCGCCTGATC 1265946 Query 65 CCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 | ||| ||||| ||||| ||| |||| | ||||||||||||| |||||| Sbjct 1265947 GCCAGTTGGCATCGTTTATGGTCGGAACTAGGGCGGTATCTGATCGCCTTCGA 1265999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278334736950