Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Petromyzon_20marinus_20[genbank_20GCA_5F000148955.1_202010-10-07] 25,005 sequences; 885,534,757 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq8930 161 2e-37 seq4673 161 2e-37 seq77 161 2e-37 seq1865 141 2e-31 seq24957 127 4e-27 seq22946 122 2e-25 seq16 120 6e-25 >seq8930 Length=22886 Score = 161 bits (178), Expect = 2e-37 Identities = 182/240 (76%), Gaps = 3/240 (1%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTT-GCTCGAATACATTAGCATGG 132 |||||||||| |||||| |||||||||||||||||| || ||||| ||| || Sbjct 9764 TTTACTTTGAGAAAATTGGAGTGTTCAAAGCAGGCCGCACGCCTGAATAGTGCAGCTGGG 9823 Query 133 AATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTA 192 |||||| ||||||||| | |||||||||||||||||||| | || | | ||||||| Sbjct 9824 AATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTTTCGGAACGGAGGCCATGATTA 9882 Query 193 ATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTG 252 | ||||| | |||||| | ||||| || ||||||||||||||||||| Sbjct 9883 AGAGGGACTGCCGGGGGCATTCGTATTGTGCCGTTAGAGGTGAAATTCTTGGATCGGCGC 9942 Query 253 AAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 ||||| | | | |||||||| || ||||| |||| ||||||||||| |||||||||| Sbjct 9943 AAGACGAGCGAAAGCGAAAGCATTTGCCAAGAATGTCTTCATTAATCA-AGAACGAAAGT 10001 >seq4673 Length=24731 Score = 161 bits (178), Expect = 2e-37 Identities = 182/240 (76%), Gaps = 3/240 (1%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTT-GCTCGAATACATTAGCATGG 132 |||||||||| |||||| |||||||||||||||||| || ||||| ||| || Sbjct 17383 TTTACTTTGAGAAAATTGGAGTGTTCAAAGCAGGCCGCACGCCTGAATAGTGCAGCTGGG 17442 Query 133 AATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTA 192 |||||| ||||||||| | |||||||||||||||||||| | || | | ||||||| Sbjct 17443 AATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTTTCGGAACGGAGGCCATGATTA 17501 Query 193 ATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTG 252 | ||||| | |||||| | ||||| || ||||||||||||||||||| Sbjct 17502 AGAGGGACTGCCGGGGGCATTCGTATTGTGCCGTTAGAGGTGAAATTCTTGGATCGGCGC 17561 Query 253 AAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 ||||| | | | |||||||| || ||||| |||| ||||||||||| |||||||||| Sbjct 17562 AAGACGAGCGAAAGCGAAAGCATTTGCCAAGAATGTCTTCATTAATCA-AGAACGAAAGT 17620 >seq77 Length=790685 Score = 161 bits (178), Expect = 2e-37 Identities = 182/240 (76%), Gaps = 3/240 (1%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTT-GCTCGAATACATTAGCATGG 132 |||||||||| |||||| |||||||||||||||||| || ||||| ||| || Sbjct 159113 TTTACTTTGAGAAAATTGGAGTGTTCAAAGCAGGCCGCACGCCTGAATAGTGCAGCTGGG 159054 Query 133 AATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTA 192 |||||| ||||||||| | |||||||||||||||||||| | || | | ||||||| Sbjct 159053 AATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTTTCGGAACGGAGGCCATGATTA 158995 Query 193 ATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTG 252 | ||||| | |||||| | ||||| || ||||||||||||||||||| Sbjct 158994 AGAGGGACTGCCGGGGGCATTCGTATTGTGCCGTTAGAGGTGAAATTCTTGGATCGGCGC 158935 Query 253 AAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 ||||| | | | |||||||| || ||||| |||| ||||||||||| |||||||||| Sbjct 158934 AAGACGAGCGAAAGCGAAAGCATTTGCCAAGAATGTCTTCATTAATCA-AGAACGAAAGT 158876 >seq1865 Length=88183 Score = 141 bits (156), Expect = 2e-31 Identities = 166/222 (75%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTT-GCTCGAATACATTAGCATGG 132 |||||||||| |||||| |||||||||||||||||| || ||||| ||| || Sbjct 75926 TTTACTTTGAGAAAATTGGAGTGTTCAAAGCAGGCCGCACGCCTGAATAGTGCAGCTGGG 75867 Query 133 AATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTA 192 |||||| ||||||||| | |||||||||||||||||||| | || | | ||||||| Sbjct 75866 AATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTTTCGGAACGGAGGCCATGATTA 75808 Query 193 ATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTG 252 | ||||| | |||||| | ||||| || ||||||||||||||||||| Sbjct 75807 AGAGGGACTGCCGGGGGCATTCGTATTGTGCCGTTAGAGGTGAAATTCTTGGATCGGCGC 75748 Query 253 AAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCAT 294 ||||| | | | |||||||| || ||||| |||| ||||| Sbjct 75747 AAGACGAGCGAAAGCGAAAGCATTTGCCAAGAATGTCTTCAT 75706 >seq24957 Length=375254 Score = 127 bits (140), Expect = 4e-27 Identities = 173/240 (72%), Gaps = 16/240 (7%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCC-TTTGCTCGAATACATTAGCATGG 132 |||||||||| |||||| |||||||||||||||||| || ||||| || || Sbjct 177936 TTTACTTTGAGAAAATTGGAGTGTTCAAAGCAGGCCGCACGCCTGAATAGTGCAGTTGGG 177995 Query 133 AATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTA 192 |||||| ||||||||| | |||||||||||||||||||| | || | | ||||||| Sbjct 177996 AATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTTTCGGAACGGAGGCCATGATTA 178054 Query 193 ATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTG 252 | ||||| | |||||| || ||||||||||||||||||| | Sbjct 178055 AGAGGGACTGCCGGGGG-------------CCGTTAGAGGTGAAATTCTTGGATCGGTGC 178101 Query 253 AAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 |||| | | | |||||||| || ||||| || | |||||||||| |||||||||| Sbjct 178102 AAGATGAGCGAAAGCGAAAGCATTTGCCAAGAATTTCTTCATTAATC-CAGAACGAAAGT 178160 >seq22946 Length=172360 Score = 122 bits (134), Expect = 2e-25 Identities = 133/174 (76%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTT-GCTCGAATACATTAGCATGG 132 |||||||||| |||||| |||||||||||||||||| || ||||| ||| || Sbjct 170392 TTTACTTTGAGAAAATTGGAGTGTTCAAAGCAGGCCACACGCCTGAATAGTGCAGCTGGG 170333 Query 133 AATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTA 192 |||||| ||||||||| | |||||||||||||||||||| | || | | ||||||| Sbjct 170332 AATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTTTCGGAACGGAGGCCATGATTA 170274 Query 193 ATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGAT 246 | ||||| | |||||| ||||| || ||||||||||||||||||| Sbjct 170273 AGAGGGACTGCCGGGGGCAATCGTATTGTGCCGTTAGAGGTGAAATTCTTGGAT 170220 >seq16 Length=1685948 Score = 120 bits (132), Expect = 6e-25 Identities = 138/182 (76%), Gaps = 3/182 (2%) Strand=Plus/Minus Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 |||||||| ||||||||| | |||||||||||||||||||| | ||| || | ||||| Sbjct 1266185 GGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTT-TCGGAACGAGGCCATGAT 1266128 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| ||||| | |||||| | ||||| || ||||||||||||||||||| Sbjct 1266127 TAAGAGGGACTGCCGGGGGCATTCGTATTGTGCCGTTAGAGGTGAAATTCTTGGATCGGC 1266068 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||||| | | | |||||||| || | | | |||| ||||||||||| |||||||| Sbjct 1266067 GCAAGACGAGCGAAAGCGAAAGCATTTGCTATGAATGTCTTCATTAATCA-AGAACGAAA 1266009 Query 311 GT 312 || Sbjct 1266008 GT 1266007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914971154240