Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Petromyzon_20marinus_20[genbank_20GCA_5F000148955.1_202010-10-07] 25,005 sequences; 885,534,757 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq16 159 1e-36 seq24957 154 6e-35 seq8249 136 2e-29 seq1484 134 6e-29 seq1971 109 2e-21 seq1404 105 3e-20 >seq16 Length=1685948 Score = 159 bits (176), Expect = 1e-36 Identities = 114/130 (88%), Gaps = 1/130 (1%) Strand=Plus/Minus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||| || ||||||||||||||||||||||||||||||||| |||| || |||||| Sbjct 956250 AGAGCGTACGTGTTGGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAGGCCAGA 956191 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 |||||||||||||||||| || |||||||||| ||||| ||||||||||| | ||||| Sbjct 956190 GGAAACTCTGGTGGAGGCCCGTAGCGGTTCTGACGTGC-AATCGATCGTCCGACCTGGGT 956132 Query 674 ATAGGGGCGA 683 |||||||||| Sbjct 956131 ATAGGGGCGA 956122 >seq24957 Length=375254 Score = 154 bits (170), Expect = 6e-35 Identities = 112/130 (86%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||| || |||||||||| |||||||||||||||||||||| |||| || |||||| Sbjct 180577 AGAGCGTACGTGTTGGGACCTGAAAGATGGTGAACTATGCCTGGGCAGGGCGAGGCCAGA 180636 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 |||||||||||||||||| || |||||||||| ||||||| |||||| || | ||||| Sbjct 180637 GGAAACTCTGGTGGAGGCCCGTAGCGGTTCTGACGTGCAACTCGATCATCCGACCTGGGT 180696 Query 674 ATAGGGGCGA 683 |||||||||| Sbjct 180697 ATAGGGGCGA 180706 Score = 96.9 bits (106), Expect = 1e-17 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 87 TCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAA 146 ||||| ||||||||| ||| ||||||||||| ||||||| | ||| ||||| |||| Sbjct 179765 TCTAAGGCTAAATATGGGCATGAGACCGATAGGCGACAAGTACAATGAGGGAAAGTTGAA 179824 Query 147 AAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||| ||| || |||||||||| || || |||||||| || || ||| || || Sbjct 179825 AAGAACTCTGAAAAGAGAGTTCAAGAGGACGTGAAACCGTCGAGAGGTAAACG 179877 >seq8249 Length=12930 Score = 136 bits (150), Expect = 2e-29 Identities = 107/128 (84%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||| || ||||||||||| ||||||||||||||||||||| ||||||| |||||| Sbjct 736 AGAGCGTACGTGTTGGGACCCAAAAGATGGTGAACTATGCCTGGGCAGGGTGAGGCCAGA 677 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 |||||||| ||||||||| | || ||||||| ||||||||| ||| ||| | ||||| Sbjct 676 GGAAACTCAGGTGGAGGCCCATAGTGGTTCTGACGTGCAAATGGATTGTCCGACCTGGGT 617 Query 674 ATAGGGGC 681 || ||||| Sbjct 616 ATTGGGGC 609 >seq1484 Length=203870 Score = 134 bits (148), Expect = 6e-29 Identities = 101/118 (86%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||||||||||||||||||||||||||| |||| |||| || ||||||||||| ||| Sbjct 49275 TGTTGGGACCCGAAAGATGGTGAACTATACCTGGGCAGGGCGAGGCCAGAGGAAA--CTG 49332 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 | | |||| || |||||||||| ||||||||||||||||| | ||||||||||||| Sbjct 49333 GAGAAGGCCCGTAGCGGTTCTGACGTGCAAATCGATCGTCTGACCTGGGTATAGGGGC 49390 >seq1971 Length=50295 Score = 109 bits (120), Expect = 2e-21 Identities = 99/128 (77%), Gaps = 14/128 (11%) Strand=Plus/Plus Query 556 AGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGG 615 ||| || |||||||||||||||||||||||||||||||||| |||| || |||||||| Sbjct 45826 AGCGTACCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAGGCCAGAGG 45885 Query 616 AAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTAT 675 ||||||| | ||||||| ||||||||||||| ||| | |||| || Sbjct 45886 AAACTCT--------------GTGGTTCTGACGTGCAAATCGATTGTCCGACCTGGGAAT 45931 Query 676 AGGGGCGA 683 |||||||| Sbjct 45932 AGGGGCGA 45939 >seq1404 Length=1759624 Score = 105 bits (116), Expect = 3e-20 Identities = 103/134 (77%), Gaps = 14/134 (10%) Strand=Plus/Minus Query 550 AGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGC 609 ||| |||| || |||||||||||||||||||| || | ||| || Sbjct 722186 AGTGAGAGTGTACGTGTTGGGACCCGAAAGATGGC--------CC------GTGTGGGGC 722141 Query 610 CAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTT 669 |||||||||||||||||||||| || |||||||||| ||||||||||||||||| | | Sbjct 722140 CAGAGGAAACTCTGGTGGAGGCCCGTAGCGGTTCTGACGTGCAAATCGATCGTCCGACCT 722081 Query 670 GGGTATAGGGGCGA 683 |||| ||||||||| Sbjct 722080 GGGTGTAGGGGCGA 722067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079463642750