Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Petromyzon_20marinus_20[genbank_20GCA_5F000148955.1_202010-10-07] 25,005 sequences; 885,534,757 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq8930 253 3e-65 seq77 253 3e-65 seq6871 248 1e-63 seq16 241 2e-61 seq24957 239 7e-61 seq22946 230 4e-58 seq7562 172 9e-41 seq6567 87.8 3e-15 >seq8930 Length=22886 Score = 253 bits (280), Expect = 3e-65 Identities = 207/247 (84%), Gaps = 6/247 (2%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| || Sbjct 10497 TCAGTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TC 10439 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACC--ATAGT 133 || || | |||||| |||||| | ||||||||||||||| | || ||| | || Sbjct 10438 AATCT-CGTGTGGCTGAAAGCCACTCGTCCCTCTAAGAAGCTCAACGCCGACCGCACAGG 10380 Query 134 CGATGGG--GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAAT 191 | | | |||| |||||| || |||||||||||||||||||| |||||||||||| Sbjct 10379 GGCCGCGTAGCTAGTTAGCACGTCGGAGTCTCGTTCGTTATCGGAATGAACCAGACAAAT 10320 Query 192 CACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCA 251 | |||||||||||| ||||||||||||||||||||||| ||||| |||||||||| ||| Sbjct 10319 CGCTCCACCAACTACGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCTCTCA 10260 Query 252 ATCTGTC 258 ||||||| Sbjct 10259 ATCTGTC 10253 >seq77 Length=790685 Score = 253 bits (280), Expect = 3e-65 Identities = 207/247 (84%), Gaps = 6/247 (2%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| || Sbjct 158380 TCAGTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TC 158438 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACC--ATAGT 133 || || | |||||| |||||| | ||||||||||||||| | || ||| | || Sbjct 158439 AATCT-CGTGTGGCTGAAAGCCACTCGTCCCTCTAAGAAGCTCAACGCCGACCGCACAGG 158497 Query 134 CGATGGG--GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAAT 191 | | | |||| |||||| || |||||||||||||||||||| |||||||||||| Sbjct 158498 GGCCGCGTAGCTAGTTAGCACGTCGGAGTCTCGTTCGTTATCGGAATGAACCAGACAAAT 158557 Query 192 CACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCA 251 | |||||||||||| ||||||||||||||||||||||| ||||| |||||||||| ||| Sbjct 158558 CGCTCCACCAACTACGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCTCTCA 158617 Query 252 ATCTGTC 258 ||||||| Sbjct 158618 ATCTGTC 158624 >seq6871 Length=17114 Score = 248 bits (274), Expect = 1e-63 Identities = 206/247 (83%), Gaps = 6/247 (2%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||| |||||||||||||| | ||||||||||||||||||||||||||||||| || Sbjct 10439 TCAGTGTAACGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TC 10497 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACC--ATAGT 133 || || | |||||| |||||| | ||||||||||||||| | || ||| | || Sbjct 10498 AATCT-CGTGTGGCTGAAAGCCACTCGTCCCTCTAAGAAGCTCAACGCCGACCGCACAGG 10556 Query 134 CGATGGG--GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAAT 191 | | | |||| |||||| || |||||||||||||||||||| |||||||||||| Sbjct 10557 GGCCGCGTAGCTAGTTAGCACGTCGGAGTCTCGTTCGTTATCGGAATGAACCAGACAAAT 10616 Query 192 CACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCA 251 | |||||||||||| ||||||||||||||||||||||| ||||| |||||||||| ||| Sbjct 10617 CGCTCCACCAACTACGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCTCTCA 10676 Query 252 ATCTGTC 258 ||||||| Sbjct 10677 ATCTGTC 10683 >seq16 Length=1685948 Score = 241 bits (266), Expect = 2e-61 Identities = 208/251 (83%), Gaps = 9/251 (4%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||| Sbjct 800371 TCAGTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC 800429 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC-CA--GCC-ACCAACCATA 131 || | || |||||| |||||| | ||||||||||||||| || ||| ||| || Sbjct 800430 AATC-TCGTGTGGCTGAAAGCCACTCGTCCCTCTAAGAAGCTCAACGCCGACCGCACAGG 800488 Query 132 GTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAAT 191 | | | |||| |||||| || |||||||||||||||||||| |||||||||||| Sbjct 800489 GGCCGCGTAGCTAGTTAGCACGTCGGAGTCTCGTTCGTTATCGGAATGAACCAGACAAAT 800548 Query 192 CACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCA 251 | || ||||||| ||||||||||||||||||||||| ||||| |||||||||| ||| Sbjct 800549 CGCT---CCAACTACGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCTCTCA 800605 Query 252 ATCTGTCCTCC 262 ||||||| ||| Sbjct 800606 ATCTGTCATCC 800616 Score = 233 bits (258), Expect = 3e-59 Identities = 204/247 (83%), Gaps = 10/247 (4%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||| Sbjct 958428 TCAGTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC 958486 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC-CA--GCC-ACCAACCATA 131 || || |||||| |||||| | ||||||||||||||| || ||| ||| || Sbjct 958487 AA--CTCGTGTGGCTGAAAGCCACTCGTCCCTCTAAGAAGCTCAACGCCGACCGCACAGG 958544 Query 132 GTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAAT 191 | | | |||| |||||| || |||||||||||||||||||| |||||||||||| Sbjct 958545 GGCCGCGTAGCTAGTTAGCACGTCGGAGTCTCGTTCGTTATCGGAATGAACCAGACAAAT 958604 Query 192 CACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCA 251 | || ||||||| ||||||||||||||||||||||| ||||| |||||||||| ||| Sbjct 958605 CGCT---CCAACTACGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCTCTCA 958661 Query 252 ATCTGTC 258 ||||||| Sbjct 958662 ATCTGTC 958668 >seq24957 Length=375254 Score = 239 bits (264), Expect = 7e-61 Identities = 204/247 (83%), Gaps = 6/247 (2%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| || Sbjct 178656 TCAGTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TC 178598 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACC--ATAGT 133 || || | |||||| |||||| | ||||||||||||||| | || ||| | || Sbjct 178597 AATCT-CGTGTGGCTGAAAGCCACTCGTCCCTCTAAGAAGCTCAACGCCGACCGCACAGG 178539 Query 134 CGATGGGG--CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAAT 191 | | | ||| |||||| || |||||||||||||| ||||| |||||||||||| Sbjct 178538 AGCCGCGTACCTAGTTAGCACGTCGGAGTCTCGTTCGTTATTGGAATGAACCAGACAAAT 178479 Query 192 CACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCA 251 | |||||||||||| ||||||||||||||||||||||| |||| |||||||||| ||| Sbjct 178478 CGCTCCACCAACTACGAACGGCCATGCACCACCACCCACGGAATGGAGAAAGAGCTCTCA 178419 Query 252 ATCTGTC 258 ||||||| Sbjct 178418 ATCTGTC 178412 >seq22946 Length=172360 Score = 230 bits (254), Expect = 4e-58 Identities = 203/247 (82%), Gaps = 6/247 (2%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||||||||||||||| | |||||||||||||||||||||||||||||| || Sbjct 169815 TCAGTGTAGCGCGCGTGCGGCCTCGGACATCTAAGGGCATCACAGACCTGTTATTGT-TC 169873 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC-CA--GCC-ACCAACCATA 131 || || | |||||| |||||| | ||||||||||||||| || ||| ||| || | Sbjct 169874 AATCT-CGTGTGGCTGAAAGCCACTCGTCCCTCTAAGAAGCTCAACGCCGACCGCACAGA 169932 Query 132 GTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAAT 191 | | | |||| |||||| | ||||||||||||||||||| |||||||||||| Sbjct 169933 GGCCGCGTAGCTAGTTAGCACATCGGAATCTCGTTCGTTATCGGAATGAACCAGACAAAT 169992 Query 192 CACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCA 251 | |||||||||||| |||||||||||||||||||||| |||| |||||||||| ||| Sbjct 169993 CGCTCCACCAACTACAAACGGCCATGCACCACCACCCACGGAATTGAGAAAGAGCTCTCA 170052 Query 252 ATCTGTC 258 ||||||| Sbjct 170053 ATCTGTC 170059 >seq7562 Length=14454 Score = 172 bits (190), Expect = 9e-41 Identities = 190/247 (77%), Gaps = 6/247 (2%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||||| | ||||| || | |||||||| ||||| |||||||| |||||| || Sbjct 5805 TCAGTGTAGCGCACATGCGGTCCCGGACATCTAAAGGCATTTCAGACCTGGTATTGC-TC 5863 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC-CAGCCACCAAC-CATAGT 133 || || || ||||| ||||| | ||||||| ||||||| || | || | | || || Sbjct 5864 AATCTCGTAT-GGCTGAGAGCCACTCGTCCCTCAAAGAAGCTCAACGACAACCGCACAGG 5922 Query 134 CGATGGG--GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAAT 191 | | |||| |||| || ||||| ||||||||| |||| || ||||||||| Sbjct 5923 GGCCGCATAGCTAGCTAGCTCGTCGGAGTCTCATTCGTTATCAGAATGAATCAGACAAAT 5982 Query 192 CACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCA 251 | || ||||||||| || ||||||||||||||||||| |||| |||||||||| ||| Sbjct 5983 CGCTTCACCAACTACAAATGGCCATGCACCACCACCCACGGAATTGAGAAAGAGCTCTCA 6042 Query 252 ATCTGTC 258 ||||||| Sbjct 6043 ATCTGTC 6049 >seq6567 Length=16551 Score = 87.8 bits (96), Expect = 3e-15 Identities = 58/63 (92%), Gaps = 1/63 (2%) Strand=Plus/Plus Query 159 GTCTCGTTCGTTATCGG-AATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATG 217 ||||||||||||||||| ||| ||||||||||||| |||||||||||| |||||||| || Sbjct 6519 GTCTCGTTCGTTATCGGGAATGAACCAGACAAATCGCTCCACCAACTACGAACGGCCGTG 6578 Query 218 CAC 220 ||| Sbjct 6579 CAC 6581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796606986405