Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Petromyzon_20marinus_20[genbank_20GCA_5F000148955.1_202010-10-07] 25,005 sequences; 885,534,757 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq24957 91.5 9e-17 seq8930 91.5 9e-17 seq77 91.5 9e-17 seq1971 86.0 4e-15 seq22946 77.0 2e-12 seq16 75.2 7e-12 seq3323 73.4 2e-11 >seq24957 Length=375254 Score = 91.5 bits (100), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 178851 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 178794 Query 109 TAATACAACGCAAGCT 124 |||| ||||||||||| Sbjct 178793 TAAT-CAACGCAAGCT 178779 >seq8930 Length=22886 Score = 91.5 bits (100), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 10689 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 10632 Query 109 TAATACAACGCAAGCT 124 |||| ||||||||||| Sbjct 10631 TAAT-CAACGCAAGCT 10617 >seq77 Length=790685 Score = 91.5 bits (100), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 158181 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 158238 Query 109 TAATACAACGCAAGCT 124 |||| ||||||||||| Sbjct 158239 TAAT-CAACGCAAGCT 158253 >seq1971 Length=50295 Score = 86.0 bits (94), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| || |||||||| ||||||||||||||||||| Sbjct 45092 CTCACTAAACCATC-CAATCGGTAGTA-GCCACGGGCGGTGTGTACAAAGGGCAGGGACT 45035 Query 109 TAATACAACGCAAGCT 124 |||| ||||||||||| Sbjct 45034 TAAT-CAACGCAAGCT 45020 >seq22946 Length=172360 Score = 77.0 bits (84), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| | || || || |||||| ||||||||||| ||||||||||||||||||| Sbjct 169616 CTCACTAAACTATC-CAATCAGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 169673 Query 109 TAATACAACGCAAGCT 124 |||| ||||||| ||| Sbjct 169674 TAAT-CAACGCACGCT 169688 >seq16 Length=1685948 Score = 75.2 bits (82), Expect = 7e-12 Identities = 56/63 (89%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 1444818 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 1444875 Query 109 TAA 111 ||| Sbjct 1444876 TAA 1444878 >seq3323 Length=33770 Score = 73.4 bits (80), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || || |||||| ||||| ||||| ||| ||||||||||||||| Sbjct 25698 CTCACTAAACCATC-CAATCAGTAGTA-GCGACAGGCGGCGTGAACAAAGGGCAGGGAC- 25754 Query 109 TAATACAACGCAAGCT 124 | || ||||||||||| Sbjct 25755 TTATTCAACGCAAGCT 25770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300729485900