Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Petromyzon_20marinus_20[genbank_20GCA_5F000148955.1_202010-10-07] 25,005 sequences; 885,534,757 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq8930 100 3e-19 seq4673 100 3e-19 seq1865 100 3e-19 seq77 100 3e-19 seq22946 91.5 2e-16 seq24957 86.0 7e-15 >seq8930 Length=22886 Score = 100 bits (110), Expect = 3e-19 Identities = 146/195 (75%), Gaps = 11/195 (6%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | ||||||||| |||||||| ||| ||||| |||| Sbjct 9861 AAACCAACAAAATAGAACCG-AGGTCCTATTCCATTATTCCCAGCTGCACTATTCAGGCG 9803 Query 70 TAAG-CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGC---A 125 | | |||||||||||||||| ||||||||||| ||||| | | | | || |||| | Sbjct 9802 TGCGGCCTGCTTTGAACACTCCAATTTTCTCAAAGTAAACG-CTTCGGACCCCCGCAGGA 9744 Query 126 CAC-CAATGAAG-GCATAC-GGGCTCACCAAGAGGT-AGGGCTGGGTAATGCAGT-ACTC 180 ||| ||| ||| |||| | ||| |||| |||||| |||| ||| | ||||| || | Sbjct 9743 CACTCAACCAAGAGCATCCGGGGAGCACCGAGAGGTGGGGGCCGGGACAGGCAGTGACAC 9684 Query 181 GCCGTGAGGCGGACC 195 || | |||||||| Sbjct 9683 ACCTCGCGGCGGACC 9669 >seq4673 Length=24731 Score = 100 bits (110), Expect = 3e-19 Identities = 146/195 (75%), Gaps = 11/195 (6%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | ||||||||| |||||||| ||| ||||| |||| Sbjct 17480 AAACCAACAAAATAGAACCG-AGGTCCTATTCCATTATTCCCAGCTGCACTATTCAGGCG 17422 Query 70 TAAG-CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGC---A 125 | | |||||||||||||||| ||||||||||| ||||| | | | | || |||| | Sbjct 17421 TGCGGCCTGCTTTGAACACTCCAATTTTCTCAAAGTAAACG-CTTCGGACCCCCGCAGGA 17363 Query 126 CAC-CAATGAAG-GCATAC-GGGCTCACCAAGAGGT-AGGGCTGGGTAATGCAGT-ACTC 180 ||| ||| ||| |||| | ||| |||| |||||| |||| ||| | ||||| || | Sbjct 17362 CACTCAACCAAGAGCATCCGGGGAGCACCGAGAGGTGGGGGCCGGGACAGGCAGTGACAC 17303 Query 181 GCCGTGAGGCGGACC 195 || | |||||||| Sbjct 17302 ACCTCGCGGCGGACC 17288 >seq1865 Length=88183 Score = 100 bits (110), Expect = 3e-19 Identities = 146/195 (75%), Gaps = 11/195 (6%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | ||||||||| |||||||| ||| ||||| |||| Sbjct 75829 AAACCAACAAAATAGAACCG-AGGTCCTATTCCATTATTCCCAGCTGCACTATTCAGGCG 75887 Query 70 TAAG-CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGC---A 125 | | |||||||||||||||| ||||||||||| ||||| | | | | || |||| | Sbjct 75888 TGCGGCCTGCTTTGAACACTCCAATTTTCTCAAAGTAAACG-CTTCGGACCCCCGCAGGA 75946 Query 126 CAC-CAATGAAG-GCATAC-GGGCTCACCAAGAGGT-AGGGCTGGGTAATGCAGT-ACTC 180 ||| ||| ||| |||| | ||| |||| |||||| |||| ||| | ||||| || | Sbjct 75947 CACTCAACCAAGAGCATCCGGGGAGCACCGAGAGGTGGGGGCCGGGACAGGCAGTGACAC 76006 Query 181 GCCGTGAGGCGGACC 195 || | |||||||| Sbjct 76007 ACCTCGCGGCGGACC 76021 >seq77 Length=790685 Score = 100 bits (110), Expect = 3e-19 Identities = 146/195 (75%), Gaps = 11/195 (6%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | ||||||||| |||||||| ||| ||||| |||| Sbjct 159016 AAACCAACAAAATAGAACCG-AGGTCCTATTCCATTATTCCCAGCTGCACTATTCAGGCG 159074 Query 70 TAAG-CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGC---A 125 | | |||||||||||||||| ||||||||||| ||||| | | | | || |||| | Sbjct 159075 TGCGGCCTGCTTTGAACACTCCAATTTTCTCAAAGTAAACG-CTTCGGACCCCCGCAGGA 159133 Query 126 CAC-CAATGAAG-GCATAC-GGGCTCACCAAGAGGT-AGGGCTGGGTAATGCAGT-ACTC 180 ||| ||| ||| |||| | ||| |||| |||||| |||| ||| | ||||| || | Sbjct 159134 CACTCAACCAAGAGCATCCGGGGAGCACCGAGAGGTGGGGGCCGGGACAGGCAGTGACAC 159193 Query 181 GCCGTGAGGCGGACC 195 || | |||||||| Sbjct 159194 ACCTCGCGGCGGACC 159208 >seq22946 Length=172360 Score = 91.5 bits (100), Expect = 2e-16 Identities = 144/195 (74%), Gaps = 11/195 (6%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | ||||||||| |||||||| ||| ||||| |||| Sbjct 170295 AAACCAACAAAATAGAACCG-AGGTCCTATTCCATTATTCCCAGCTGCACTATTCAGGCG 170353 Query 70 TAAG-CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGC---A 125 | | |||||||||||||||| ||||||||||| || ||| | | | || |||| | Sbjct 170354 TGTGGCCTGCTTTGAACACTCCAATTTTCTCAAAGT-AAATACTTTGGACCCCCGCAGGA 170412 Query 126 CAC-CAATGAAG-GCATAC-GGGCTCACCAAGAGGT-AGGGCTGGGTAATGCAGT-ACTC 180 ||| ||| ||| |||| | | | |||| |||||| |||| ||| | ||||| || | Sbjct 170413 CACTCAACCAAGAGCATCCAGAGAGCACCGAGAGGTGGGGGCCGGGACAGGCAGTGACAC 170472 Query 181 GCCGTGAGGCGGACC 195 || | |||||||| Sbjct 170473 ACCTCGCGGCGGACC 170487 >seq24957 Length=375254 Score = 86.0 bits (94), Expect = 7e-15 Identities = 80/99 (81%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | ||||||||| |||||||| || ||||| |||| Sbjct 178033 AAACCAACAAAATAGAACCG-AGGTCCTATTCCATTATTCCCAACTGCACTATTCAGGCG 177975 Query 70 TAAG-CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 | | |||||||||||||||| ||||||||||| ||||| Sbjct 177974 TGCGGCCTGCTTTGAACACTCCAATTTTCTCAAAGTAAA 177936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595055821170