Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Petromyzon_20marinus_20[genbank_20GCA_5F000148955.1_202010-10-07] 25,005 sequences; 885,534,757 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq8930 102 8e-20 seq4673 102 8e-20 seq1865 102 8e-20 seq77 102 8e-20 seq22946 98.7 1e-18 seq24957 80.6 3e-13 >seq8930 Length=22886 Score = 102 bits (112), Expect = 8e-20 Identities = 130/175 (74%), Gaps = 3/175 (2%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC-TTTGCTCGAATACATTACCATGG 71 |||||||||| |||||| ||| |||||||||||||| || ||||| | | || Sbjct 9764 TTTACTTTGAGAAAATTGGAGTGTTCAAAGCAGGCCGCACGCCTGAATAGTGCAGCTGGG 9823 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATA 131 |||||| ||||||||| | |||||||||||||| ||||| | ||| || | ||||| Sbjct 9824 AATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTT-TCGGAACGGAGGCCATGATT 9881 Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 || | ||| | |||||| | ||||| || | ||||||||||||||||| Sbjct 9882 AAGAGGGACTGCCGGGGGCATTCGTATTGTGCCGTTAGAGGTGAAATTCTTGGAT 9936 >seq4673 Length=24731 Score = 102 bits (112), Expect = 8e-20 Identities = 130/175 (74%), Gaps = 3/175 (2%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC-TTTGCTCGAATACATTACCATGG 71 |||||||||| |||||| ||| |||||||||||||| || ||||| | | || Sbjct 17383 TTTACTTTGAGAAAATTGGAGTGTTCAAAGCAGGCCGCACGCCTGAATAGTGCAGCTGGG 17442 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATA 131 |||||| ||||||||| | |||||||||||||| ||||| | ||| || | ||||| Sbjct 17443 AATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTT-TCGGAACGGAGGCCATGATT 17500 Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 || | ||| | |||||| | ||||| || | ||||||||||||||||| Sbjct 17501 AAGAGGGACTGCCGGGGGCATTCGTATTGTGCCGTTAGAGGTGAAATTCTTGGAT 17555 >seq1865 Length=88183 Score = 102 bits (112), Expect = 8e-20 Identities = 130/175 (74%), Gaps = 3/175 (2%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC-TTTGCTCGAATACATTACCATGG 71 |||||||||| |||||| ||| |||||||||||||| || ||||| | | || Sbjct 75926 TTTACTTTGAGAAAATTGGAGTGTTCAAAGCAGGCCGCACGCCTGAATAGTGCAGCTGGG 75867 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATA 131 |||||| ||||||||| | |||||||||||||| ||||| | ||| || | ||||| Sbjct 75866 AATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTT-TCGGAACGGAGGCCATGATT 75809 Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 || | ||| | |||||| | ||||| || | ||||||||||||||||| Sbjct 75808 AAGAGGGACTGCCGGGGGCATTCGTATTGTGCCGTTAGAGGTGAAATTCTTGGAT 75754 >seq77 Length=790685 Score = 102 bits (112), Expect = 8e-20 Identities = 130/175 (74%), Gaps = 3/175 (2%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC-TTTGCTCGAATACATTACCATGG 71 |||||||||| |||||| ||| |||||||||||||| || ||||| | | || Sbjct 159113 TTTACTTTGAGAAAATTGGAGTGTTCAAAGCAGGCCGCACGCCTGAATAGTGCAGCTGGG 159054 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATA 131 |||||| ||||||||| | |||||||||||||| ||||| | ||| || | ||||| Sbjct 159053 AATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTT-TCGGAACGGAGGCCATGATT 158996 Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 || | ||| | |||||| | ||||| || | ||||||||||||||||| Sbjct 158995 AAGAGGGACTGCCGGGGGCATTCGTATTGTGCCGTTAGAGGTGAAATTCTTGGAT 158941 >seq22946 Length=172360 Score = 98.7 bits (108), Expect = 1e-18 Identities = 129/175 (74%), Gaps = 3/175 (2%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC-TTTGCTCGAATACATTACCATGG 71 |||||||||| |||||| ||| |||||||||||||| || ||||| | | || Sbjct 170392 TTTACTTTGAGAAAATTGGAGTGTTCAAAGCAGGCCACACGCCTGAATAGTGCAGCTGGG 170333 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATA 131 |||||| ||||||||| | |||||||||||||| ||||| | ||| || | ||||| Sbjct 170332 AATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTT-TCGGAACGGAGGCCATGATT 170275 Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 || | ||| | |||||| ||||| || | ||||||||||||||||| Sbjct 170274 AAGAGGGACTGCCGGGGGCAATCGTATTGTGCCGTTAGAGGTGAAATTCTTGGAT 170220 >seq24957 Length=375254 Score = 80.6 bits (88), Expect = 3e-13 Identities = 103/138 (75%), Gaps = 3/138 (2%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC-TTTGCTCGAATACATTACCATGG 71 |||||||||| |||||| ||| |||||||||||||| || ||||| | || Sbjct 177936 TTTACTTTGAGAAAATTGGAGTGTTCAAAGCAGGCCGCACGCCTGAATAGTGCAGTTGGG 177995 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATA 131 |||||| ||||||||| | |||||||||||||| ||||| | ||| || | ||||| Sbjct 177996 AATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTT-TCGGAACGGAGGCCATGATT 178053 Query 132 AATACGGATAGTCGGGGG 149 || | ||| | |||||| Sbjct 178054 AAGAGGGACTGCCGGGGG 178071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511875975200