Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Petromyzon_20marinus_20[genbank_20GCA_5F000148955.1_202010-10-07] 25,005 sequences; 885,534,757 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq77 196 9e-48 seq22946 187 5e-45 seq24957 176 9e-42 seq8930 176 9e-42 seq16 165 2e-38 seq7562 118 2e-24 seq6871 114 2e-23 seq1971 91.5 3e-16 seq3323 87.8 3e-15 >seq77 Length=790685 Score = 196 bits (216), Expect = 9e-48 Identities = 239/317 (75%), Gaps = 13/317 (4%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGC--CCGCTTTGGCGGGTCGCCG----GCT 73 || |||||| || |||||| |||| | || || || || ||||| || ||| Sbjct 158533 GAACGAGACTCCGACGTGCTAACTAGCTACGCGGCCCCTGTGC--GGTCGGCGTTGAGCT 158476 Query 74 TCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGAT 132 |||||||||||| | |||| |||| || | ||||| |||||||||||||||||| Sbjct 158475 TCTTAGAGGGACGAGTGGCTTTCAGCCACACGA-GATTGAG-CAATAACAGGTCTGTGAT 158418 Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT-TCATCAC 191 |||||||||||| | ||||||||||||||||||||||| | || || || || | | Sbjct 158417 GCCCTTAGATGTCCGGGGCCGCACGCGCGCTACACTGAATGGATCAGCGTGTGTCCGC-C 158359 Query 192 CTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGC 251 ||| ||||| ||| ||||||| | | |||| | ||||| | ||||| | | |||| Sbjct 158358 CTTCGCCGGCAGGCGTGGGTAACCCGTTGAAACCCATTCGTGATAGGGATTGGGGATTGG 158299 Query 252 AATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTA 311 || | || | | | |||||||||| || |||||||||| ||||| ||| |||||||||| Sbjct 158298 AACTGTTCCCCATGAACGAGGAATTCCCAGTAAGCGCGAGTCATAAGCTTGCGTTGATTA 158239 Query 312 CGTCCCTGCCCTTTGTA 328 |||||||||||||||| Sbjct 158238 AGTCCCTGCCCTTTGTA 158222 >seq22946 Length=172360 Score = 187 bits (206), Expect = 5e-45 Identities = 225/299 (75%), Gaps = 9/299 (3%) Strand=Plus/Minus Query 36 TGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCG----GCTTCTTAGAGGGACTATCGG 91 |||||| |||| | || || || ||||| || ||||||||||||||| | || Sbjct 169952 TGCTAACTAGCTACGCGGCCTCTGTGCGGTCGGCGTTGAGCTTCTTAGAGGGACGAGTGG 169893 Query 92 CTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGG 150 || |||| || | |||| |||||||||||||||||||||||||||||| | || Sbjct 169892 CTTTCAGCCACACGA-GATTGAA-CAATAACAGGTCTGTGATGCCCTTAGATGTCCGAGG 169835 Query 151 CCGCACGCGCGCTACACTGACAGAGCCAACGAGT-TCATCACCTTGGCCGGAAGGTCTGG 209 |||||||||||||||||||| | ||||| || || | |||| ||||| ||| ||| Sbjct 169834 CCGCACGCGCGCTACACTGAATGGATCAACGTGTGTCCGC-CCTTCGCCGGCAGGCGTGG 169776 Query 210 GTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACG 269 |||| | | |||| | ||||| | ||||| | | |||| || | || | | | ||| Sbjct 169775 GTAACCCGTTGAAACCCATTCGTGATAGGGATTGGGGATTGGAACTGTTCCCCATGAACA 169716 Query 270 AGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||||| || |||||||||| ||||| ||| |||||||||| |||||||||||||||| Sbjct 169715 AGGAATTCCCAGTAAGCGCGAGTCATAAGCGTGCGTTGATTAAGTCCCTGCCCTTTGTA 169657 >seq24957 Length=375254 Score = 176 bits (194), Expect = 9e-42 Identities = 199/260 (77%), Gaps = 9/260 (3%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 ||||||||||||||| | |||| |||| || | ||||| ||||||||||||||| Sbjct 178558 GCTTCTTAGAGGGACGAGTGGCTTTCAGCCACACGA-GATTGAG-CAATAACAGGTCTGT 178615 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT-TCAT 188 ||||||||||||||| | ||||||||||||||||||||||| | || || || || Sbjct 178616 GATGCCCTTAGATGTCCGGGGCCGCACGCGCGCTACACTGAATGGATCAGCGTGTGTCCG 178675 Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248 | ||||||| ||| ||||||| || | |||| | ||||| | ||||| | | Sbjct 178676 C-CCTTGGC----AGGCGTGGGTAACCTGTTGAAACCCATTCGTGATAGGGATTTGGGTT 178730 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 || || | || | | | |||||||||| || |||||| ||| ||||| ||| ||||||| Sbjct 178731 TGGAACTGTTCCCCATGAACGAGGAATTCCCAGTAAGTGCGAGTCATAAGCTTGCGTTGA 178790 Query 309 TTACGTCCCTGCCCTTTGTA 328 ||| |||||||||||||||| Sbjct 178791 TTAAGTCCCTGCCCTTTGTA 178810 >seq8930 Length=22886 Score = 176 bits (194), Expect = 9e-42 Identities = 235/317 (74%), Gaps = 20/317 (6%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGC--CCGCTTTGGCGGGTCGCCG----GCT 73 || |||||| || |||||| |||| | || || || || ||||| || ||| Sbjct 10344 GAACGAGACTCCGACGTGCTAACTAGCTACGCGGCCCCTGTGC--GGTCGGCGTTGAGCT 10401 Query 74 TCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGAT 132 |||||||||||| | |||| |||| || | ||||| |||||||||||||||||| Sbjct 10402 TCTTAGAGGGACGAGTGGCTTTCAGCCACACGA-GATTGAG-CAATAACAGGTCTGTGAT 10459 Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT-TCATCAC 191 |||||||||||| | ||||||||||||||||||||||| | || || || || | | Sbjct 10460 GCCCTTAGATGTCCGGGGCCGCACGCGCGCTACACTGAATGGATCAGCGTGTGTCCGC-C 10518 Query 192 CTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGC 251 ||| ||||| ||| ||||||| | | |||| | |||| ||||| | |||| Sbjct 10519 CTTCGCCGGCAGGCGTGGGTAACCCGTTGAAACCCATTCGT------GATAG-GGATTGG 10571 Query 252 AATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTA 311 || | || | | | |||||||||| || | |||||||| ||||| ||| |||||||||| Sbjct 10572 AACTGTTCCCCATGAACGAGGAATTCCCACTAAGCGCGAGTCATAAGCTTGCGTTGATTA 10631 Query 312 CGTCCCTGCCCTTTGTA 328 |||||||||||||||| Sbjct 10632 AGTCCCTGCCCTTTGTA 10648 >seq16 Length=1685948 Score = 165 bits (182), Expect = 2e-38 Identities = 235/316 (74%), Gaps = 21/316 (7%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGC--CCGCTTTGGCGGGTCGCCG----GCT 73 || |||||| || |||||| |||| | || || || || ||||| || ||| Sbjct 958580 GAACGAGACTCCGACGTGCTAACTAGCTACGCGGCCCCTGTGC--GGTCGGCGTTGAGCT 958523 Query 74 TCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGAT 132 |||||||||||| | |||| |||| || ||||| |||||||||||||||||| Sbjct 958522 TCTTAGAGGGACGAGTGGCTTTCAGCCACACGAG--TTGAG-CAATAACAGGTCTGTGAT 958466 Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT-TCATCAC 191 |||||||||||| | ||||||||||||||||||||||| | || || || || | | Sbjct 958465 GCCCTTAGATGTCCGGGGCCGCACGCGCGCTACACTGAATGGATCAGCGTGTGTCCGC-C 958407 Query 192 CTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGC 251 ||| ||||| ||| |||||| | || |||| | ||| | | ||||| | | |||| Sbjct 958406 CTTCGCCGGCAGGCGTGGGTA--CCCGTGAAACCCATTCG-GATAGGGAT-GGGGATTGG 958351 Query 252 AATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTA 311 || || | | | |||||||||| || |||||||||| ||||| ||| |||||||||| Sbjct 958350 AA--CTTCCCCATGAACGAGGAATTCCCAGTAAGCGCGAGTCATAAGCTTGCGTTGATTA 958293 Query 312 CGTCCCTGCCCTTTGT 327 ||||||||||||||| Sbjct 958292 -GTCCCTGCCCTTTGT 958278 Score = 107 bits (118), Expect = 4e-21 Identities = 149/200 (75%), Gaps = 13/200 (7%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGC--CCGCTTTGGCGGGTCGCCG----GCT 73 || |||||| || |||||| |||| | || || || || ||||| || ||| Sbjct 800524 GAACGAGACTCCGACGTGCTAACTAGCTACGCGGCCCCTGTGC--GGTCGGCGTTGAGCT 800467 Query 74 TCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGAT 132 |||||||||||| | |||| |||| || | ||||| |||||||||||||||||| Sbjct 800466 TCTTAGAGGGACGAGTGGCTTTCAGCCACACGA-GATTGAG-CAATAACAGGTCTGTGAT 800409 Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT-TCATCAC 191 |||||||||||| | ||||||||||||||||||||||| | || || || || | | Sbjct 800408 GCCCTTAGATGTCCGGGGCCGCACGCGCGCTACACTGAATGGATCAGCGTGTGTCCGC-C 800350 Query 192 CTTGGCCGGAAGGTCTGGGT 211 ||| ||||| ||| ||||| Sbjct 800349 CTTCGCCGGCAGGCGTGGGT 800330 >seq7562 Length=14454 Score = 118 bits (130), Expect = 2e-24 Identities = 187/260 (72%), Gaps = 10/260 (4%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 ||||||| ||||||| | ||||| |||| || || ||||| ||||| |||||||| Sbjct 5903 GCTTCTTTGAGGGACGAGTGGCTCTCAGCC-ATACGAGATTGAG-CAATACCAGGTCTGA 5846 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT-TCAT 188 ||||| |||||||| | || ||||| | |||||||||||| | || | || || Sbjct 5845 AATGCCTTTAGATGTCCGGGACCGCATGTGCGCTACACTGAATGGATCAGCATGTATCCG 5786 Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248 | |||| || || ||| ||||||| | | |||| | | ||| | ||||| | | || Sbjct 5785 C-CCTTCGCTGGCAGGCGTGGGTAACCCATTGAAACCCATTTGTGAT-GGGATTGGGGAT 5728 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 ||||| |||| | | | |||||||||| || |||||| || ||||| ||| || Sbjct 5727 TGCAACTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCTAGTCATAAGCCTGC----C 5672 Query 309 TTACGTCCCTGCCCTTTGTA 328 ||| ||||||| ||||| || Sbjct 5671 TTAAGTCCCTGTCCTTTCTA 5652 >seq6871 Length=17114 Score = 114 bits (126), Expect = 2e-23 Identities = 182/252 (72%), Gaps = 13/252 (5%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGC--CCGCTTTGGCGGGTCGCCG----GCT 73 || |||||| || |||||| |||| | || || || || ||||| || ||| Sbjct 10592 GAACGAGACTCCGACGTGCTAACTAGCTACGCGGCCCCTGTGC--GGTCGGCGTTGAGCT 10535 Query 74 TCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGAT 132 |||||||||||| | |||| |||| || | ||||| |||||||||||||||||| Sbjct 10534 TCTTAGAGGGACGAGTGGCTTTCAGCCACACGA-GATTGAG-CAATAACAGGTCTGTGAT 10477 Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT-TCATCAC 191 |||||||||||| | |||||||||||||| |||||||| | || || || || | | Sbjct 10476 GCCCTTAGATGTCCGGGGCCGCACGCGCGTTACACTGAATGGATCAGCGTGTGTCCGC-C 10418 Query 192 CTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGC 251 ||| ||||| ||| ||||||| | | |||| | |||| | ||||| | | |||| Sbjct 10417 CTTCGCCGGCAGGCGTGGGTAACCCGTTGAAACCCATTCGTTATAGGGATGGGGGATTGG 10358 Query 252 AATTATTGCTCT 263 ||| |||||| Sbjct 10357 AATCTCTGCTCT 10346 >seq1971 Length=50295 Score = 91.5 bits (100), Expect = 3e-16 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 229 TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC 288 ||||| | ||||| | | |||| || | || | | | || ||||||| || ||||||||| Sbjct 44952 TCGTGATAGGGATTGGGGATTGGAACTGTTCCCCATGAATGAGGAATTCCCAGTAAGCGC 45011 Query 289 GTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | ||||| ||| |||||||||| |||||||||||||||| Sbjct 45012 GAGTCATAAGCTTGCGTTGATTAAGTCCCTGCCCTTTGTA 45051 >seq3323 Length=33770 Score = 87.8 bits (96), Expect = 3e-15 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 207 TGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCA 266 ||||||| | | |||| | | ||| | ||||| | | |||| || | || | | | | Sbjct 25860 TGGGTAACCCGTTGAAACCCATTTGTGATAGGGATTGGGGATTGGAACTGTTCCCCATGA 25801 Query 267 ACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTG 326 ||||||||| || |||||||||| ||||| ||| ||||||| || |||||||||||||| Sbjct 25800 ACGAGGAATTCCCAGTAAGCGCGAGTCATAAGCTTGCGTTGAATAAGTCCCTGCCCTTTG 25741 Query 327 T 327 | Sbjct 25740 T 25740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946963152640