Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Petromyzon_20marinus_20[genbank_20GCA_5F000148955.1_202010-10-07] 25,005 sequences; 885,534,757 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq20841 82.4 1e-13 seq19254 82.4 1e-13 seq18531 82.4 1e-13 seq14657 82.4 1e-13 seq16 82.4 1e-13 seq24658 77.0 5e-12 seq12255 77.0 5e-12 seq1404 73.4 6e-11 seq515 73.4 6e-11 >seq20841 Length=3446 Score = 82.4 bits (90), Expect = 1e-13 Identities = 88/114 (77%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | |||| || | || |||| || || Sbjct 1996 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGCGCGTGTGCTTGGCTGAGGAGCCAAC 2053 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||| ||||||||||| |||||||| ||||||||||||||||| |||||| Sbjct 2054 GGTGCGACGCTACCATCTGAGGGATTATGACTGAACGCCTCTAAGTCCGAATCC 2107 >seq19254 Length=4113 Score = 82.4 bits (90), Expect = 1e-13 Identities = 88/114 (77%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | |||| || | || |||| || || Sbjct 1742 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGCGCGTGTGCTTGGCTGAGGAGCCAAC 1685 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||| ||||||||||| |||||||| ||||||||||||||||| |||||| Sbjct 1684 GGTGCGACGCTACCATCTGAGGGATTATGACTGAACGCCTCTAAGTCCGAATCC 1631 >seq18531 Length=4414 Score = 82.4 bits (90), Expect = 1e-13 Identities = 88/114 (77%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | |||| || | || |||| || || Sbjct 2349 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGCGCGTGTGCTTGGCTGAGGAGCCAAC 2406 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||| ||||||||||| |||||||| ||||||||||||||||| |||||| Sbjct 2407 GGTGCGACGCTACCATCTGAGGGATTATGACTGAACGCCTCTAAGTCCGAATCC 2460 >seq14657 Length=6171 Score = 82.4 bits (90), Expect = 1e-13 Identities = 88/114 (77%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | |||| || | || |||| || || Sbjct 1246 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGCGCGTGTGCTTGGCTGAGGAGCCAAC 1189 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||| ||||||||||| |||||||| ||||||||||||||||| |||||| Sbjct 1188 GGTGCGACGCTACCATCTGAGGGATTATGACTGAACGCCTCTAAGTCCGAATCC 1135 >seq16 Length=1685948 Score = 82.4 bits (90), Expect = 1e-13 Identities = 88/114 (77%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | |||| || | || |||| || || Sbjct 948884 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGCGCGTGTGCTTGGCTGAGGAGCCAAC 948827 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||| ||||||||||| |||||||| ||||||||||||||||| |||||| Sbjct 948826 GGTGCGACGCTACCATCTGAGGGATTATGACTGAACGCCTCTAAGTCCGAATCC 948773 Score = 82.4 bits (90), Expect = 1e-13 Identities = 88/114 (77%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | |||| || | || |||| || || Sbjct 1091110 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGCGCGTGTGCTTGGCTGAGGAGCCAAC 1091053 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||| ||||||||||| |||||||| ||||||||||||||||| |||||| Sbjct 1091052 GGTGCGACGCTACCATCTGAGGGATTATGACTGAACGCCTCTAAGTCCGAATCC 1090999 Score = 82.4 bits (90), Expect = 1e-13 Identities = 88/114 (77%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | |||| || | || |||| || || Sbjct 1222438 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGCGCGTGTGCTTGGCTGAGGAGCCAAC 1222381 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||| ||||||||||| |||||||| ||||||||||||||||| |||||| Sbjct 1222380 GGTGCGACGCTACCATCTGAGGGATTATGACTGAACGCCTCTAAGTCCGAATCC 1222327 Score = 82.4 bits (90), Expect = 1e-13 Identities = 88/114 (77%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | |||| || | || |||| || || Sbjct 1239373 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGCGCGTGTGCTTGGCTGAGGAGCCAAC 1239316 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||| ||||||||||| |||||||| ||||||||||||||||| |||||| Sbjct 1239315 GGTGCGACGCTACCATCTGAGGGATTATGACTGAACGCCTCTAAGTCCGAATCC 1239262 Score = 82.4 bits (90), Expect = 1e-13 Identities = 88/114 (77%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | |||| || | || |||| || || Sbjct 1270891 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGCGCGTGTGCTTGGCTGAGGAGCCAAC 1270834 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||| ||||||||||| |||||||| ||||||||||||||||| |||||| Sbjct 1270833 GGTGCGACGCTACCATCTGAGGGATTATGACTGAACGCCTCTAAGTCCGAATCC 1270780 Score = 82.4 bits (90), Expect = 1e-13 Identities = 88/114 (77%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | |||| || | || |||| || || Sbjct 1365908 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGCGCGTGTGCTTGGCTGAGGAGCCAAC 1365851 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||| ||||||||||| |||||||| ||||||||||||||||| |||||| Sbjct 1365850 GGTGCGACGCTACCATCTGAGGGATTATGACTGAACGCCTCTAAGTCCGAATCC 1365797 Score = 78.8 bits (86), Expect = 2e-12 Identities = 86/112 (77%), Gaps = 2/112 (2%) Strand=Plus/Minus Query 3 ACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGC 62 |||||||||||||| | |||||| | |||| || | || |||| || || | Sbjct 1473776 ACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGCGCGTGTGCTTGGCTGAGGAGCCAACGG 1473719 Query 63 CGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 |||| ||||||||||| |||||||| ||||||||||||||||| |||||| Sbjct 1473718 TGCGACGCTACCATCTGAGGGATTATGACTGAACGCCTCTAAGTCCGAATCC 1473667 >seq24658 Length=19510 Score = 77.0 bits (84), Expect = 5e-12 Identities = 87/114 (76%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||| || | || |||| || || Sbjct 14947 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGACGCGTGTGCTTGGCTGAGGAGCCAAC 14890 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||| ||||||||||| |||||||| ||||||||||||||||| |||||| Sbjct 14889 GGTGCGACGCTACCATCTGAGGGATTATGACTGAACGCCTCTAAGTCCGAATCC 14836 >seq12255 Length=19303 Score = 77.0 bits (84), Expect = 5e-12 Identities = 87/114 (76%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | |||| || | || |||| || || Sbjct 2480 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGCGCGTGTGCTTGGCTGAGGAGCCAAC 2537 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | | || ||||||||||| |||||||| ||||||||||||||||| |||||| Sbjct 2538 GGTGTGACGCTACCATCTGAGGGATTATGACTGAACGCCTCTAAGTCCGAATCC 2591 >seq1404 Length=1759624 Score = 73.4 bits (80), Expect = 6e-11 Identities = 83/109 (76%), Gaps = 2/109 (2%) Strand=Plus/Minus Query 6 AGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGC 65 ||||||||||| | |||||| | |||| ||| || |||| || || | || Sbjct 715838 AGAGGAACCGCAGG-TTCAGAC-ATTTGGCACGTGCACTTGGCTGAGGAGCCAACGGTGC 715781 Query 66 GAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 || ||||||||||| |||||||| ||||||||||||||||| |||||| Sbjct 715780 GACGCTACCATCTGAGGGATTATGACTGAACGCCTCTAAGTCCGAATCC 715732 >seq515 Length=648026 Score = 73.4 bits (80), Expect = 6e-11 Identities = 87/114 (76%), Gaps = 3/114 (3%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | |||| || | || |||| || || Sbjct 296294 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGCGCGTGTGCTTGGCTGAGGAGCCAAC 296237 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||| ||||||||||| |||||||| ||||||||||| ||||| |||||| Sbjct 296236 GGTGCGACGCTACCATCTGAGGGATTATGACTGAACGCCTC-AAGTCCGAATCC 296184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819001560320