Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picea_20abies_20[ConGenIE_20PRJEB1822-1.0_202015-05-12] 10,253,695 sequences; 12,301,475,675 total letters Query= NC_011356.1 Length=54896 Score E Sequences producing significant alignments: (Bits) Value seq5638432 517 3e-142 seq1966556 421 2e-113 >seq5638432 Length=298 Score = 517 bits (572), Expect = 3e-142 Identities = 293/298 (98%), Gaps = 0/298 (0%) Strand=Plus/Minus Query 53221 TTAATCTGGTGTTGCTGCTGCTTCAGCAGATGTGCGtttttttAGTCATTGCGTGGTTAA 53280 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 298 TTAATCTGGTGTTGCTGCTGCTTCAGCAGATGTGCGTTTTTTTAGTCATTGCATGGTTAA 239 Query 53281 TGAGTAAAACGCCATTATTCATACCGTTAATGCAGGTCACGGTTCGTCTGCCGCATAAAT 53340 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 238 TGAGTAAAACGCCATTATTCATACCGTTAATGCAGGTCACGGTTCGTCTGCCGCATAAAT 179 Query 53341 TTCTCTGCTACATCGTCTTTTCCATCTTCTGCATCATGGGCACCTGGTTTGNGTTGCACA 53400 |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| Sbjct 178 TTCTCTGCTACATCGTCTTTTCCACCTTCTGCATCATGGGCACCTGGTTTGGGTTGCACA 119 Query 53401 TTGACGATTCTATTGCCAATACCCGTGCGATAGGCGCGGTAATGGGCGGCTTACTCGGCG 53460 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 118 TTGACGATTCTATTGCCAATACCCGTGCGATAGGCGCGGTAATGGGCGGCTTACTCGGCG 59 Query 53461 GTCCGGTCGTCGGTGGGCTGGTTGGCCTGACCGGCGGGTTACATCGATATTCGATGGG 53518 ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 58 GTCCGGTCGTCGGTGGGCTGGTTGGGCTGACCGGCGGCTTACATCGATATTCGATGGG 1 >seq1966556 Length=1002 Score = 421 bits (466), Expect = 2e-113 Identities = 257/272 (94%), Gaps = 2/272 (1%) Strand=Plus/Plus Query 5224 TTCTTCGTCTGTTTCTACTGGTATTGGCACAAACCTGACTCCAATTTGAGCGAGGCTATG 5283 |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| Sbjct 550 TTCTTCGTCTGTTTCTACTGGTATTGGCACAAACCTGATTCCAATTTGAGCAAGGCTATG 609 Query 5284 TGCCATCTCGATACTCGTTCTTAANTCAACGGGAGATGCTTTGTGCATACAGCCCCCCGT 5343 |||||||||||||||||||||||| ||||| | ||||||||||||||||||||||| ||| Sbjct 610 TGCCATCTCGATACTCGTTCTTAACTCAACAGAAGATGCTTTGTGCATACAGCCCCTCGT 669 Query 5344 TTATTATTTATCTCTTCAGCCAGCCGCTGTGCTTTCAGGGGATTTCTGATAACAGAAAGG 5403 |||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||| Sbjct 670 TTATTATTTATCTCCTCAGCCAGCCGCTGTGCTTTCAGTGGATTTCGGATAACAGAAAGG 729 Query 5404 CCGGGAAATACCCAGCCTCGCTTTGTAACGGAGT--AGACGAAAGTGATCGCACCTACCC 5461 |||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||| Sbjct 730 CCGGGAAATACCCAGCCTCGCTTTGTAACGGAGTAGAGACGAAAGTGATTGCGCCTACCC 789 Query 5462 GGATATTATCGTGAGGATGCTTCATTGCCATT 5493 |||||||||||||||||||| |||| |||||| Sbjct 790 GGATATTATCGTGAGGATGCGTCATCGCCATT 821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 154170706388220